From a8f01bd869ab4ee4f78ba7a81f2c1fa76715533d Mon Sep 17 00:00:00 2001 From: Michael Beck Date: Sat, 13 Dec 2025 17:56:04 +0100 Subject: [PATCH] updates renv --- renv.lock | 5315 +++++++++++------------------------------------------ 1 file changed, 1083 insertions(+), 4232 deletions(-) diff --git a/renv.lock b/renv.lock index 1c6f54a..4dfcc4f 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.5.1", + "Version": "4.5.2", "Repositories": [ { "Name": "CRAN", @@ -9,24 +9,6 @@ ] }, "Packages": { - "BH": { - "Package": "BH", - "Version": "1.87.0-1", - "Source": "Repository", - "Type": "Package", - "Title": "Boost C++ Header Files", - "Date": "2024-12-17", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"John W.\", \"Emerson\", role = \"aut\"), person(\"Michael J.\", \"Kane\", role = \"aut\", comment = c(ORCID = \"0000-0003-1899-6662\")))", - "Description": "Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN packages. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.84.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process' 'propery_tree' 'qvm' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'url' 'utility' 'uuid'.", - "License": "BSL-1.0", - "URL": "https://github.com/eddelbuettel/bh, https://dirk.eddelbuettel.com/code/bh.html", - "BugReports": "https://github.com/eddelbuettel/bh/issues", - "NeedsCompilation": "no", - "Author": "Dirk Eddelbuettel [aut, cre] (), John W. Emerson [aut], Michael J. Kane [aut] ()", - "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "DBI": { "Package": "DBI", "Version": "1.2.3", @@ -76,151 +58,6 @@ "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, - "DT": { - "Package": "DT", - "Version": "0.33", - "Source": "Repository", - "Type": "Package", - "Title": "A Wrapper of the JavaScript Library 'DataTables'", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", email = \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = c(\"ctb\")), person(\"William\", \"Holmes\", role = c(\"ctb\")), person(\"Mikko\", \"Marttila\", role = c(\"ctb\")), person(\"Andres\", \"Quintero\", role = c(\"ctb\")), person(\"Stéphane\", \"Laurent\", role = c(\"ctb\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.", - "URL": "https://github.com/rstudio/DT", - "BugReports": "https://github.com/rstudio/DT/issues", - "License": "GPL-3 | file LICENSE", - "Imports": [ - "htmltools (>= 0.3.6)", - "htmlwidgets (>= 1.3)", - "httpuv", - "jsonlite (>= 0.9.16)", - "magrittr", - "crosstalk", - "jquerylib", - "promises" - ], - "Suggests": [ - "knitr (>= 1.8)", - "rmarkdown", - "shiny (>= 1.6)", - "bslib", - "future", - "testit", - "tibble" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.1", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut], Joe Cheng [aut, cre], Xianying Tan [aut], JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), Alex Pickering [ctb], William Holmes [ctb], Mikko Marttila [ctb], Andres Quintero [ctb], Stéphane Laurent [ctb], Posit Software, PBC [cph, fnd]", - "Maintainer": "Joe Cheng ", - "Repository": "CRAN" - }, - "DiceDesign": { - "Package": "DiceDesign", - "Version": "1.10", - "Source": "Repository", - "Type": "Package", - "Title": "Designs of Computer Experiments", - "Date": "2023-11-30", - "Author": "Jessica Franco, Delphine Dupuy, Olivier Roustant, Patrice Kiener, Guillaume Damblin and Bertrand Iooss.", - "Maintainer": "Celine Helbert ", - "Description": "Space-Filling Designs and space-filling criteria (distance-based and uniformity-based), with emphasis to computer experiments; .", - "License": "GPL-3", - "Depends": [ - "R (>= 2.10)" - ], - "Suggests": [ - "rgl", - "randtoolbox", - "lattice" - ], - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "LazyData": "true", - "Repository": "RSPM" - }, - "Formula": { - "Package": "Formula", - "Version": "1.2-5", - "Source": "Repository", - "Date": "2023-02-23", - "Title": "Extended Model Formulas", - "Description": "Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see ).", - "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Yves\", family = \"Croissant\", role = \"aut\", email = \"Yves.Croissant@univ-reunion.fr\"))", - "Depends": [ - "R (>= 2.0.0)", - "stats" - ], - "License": "GPL-2 | GPL-3", - "NeedsCompilation": "no", - "Author": "Achim Zeileis [aut, cre] (), Yves Croissant [aut]", - "Maintainer": "Achim Zeileis ", - "Repository": "CRAN" - }, - "GPfit": { - "Package": "GPfit", - "Version": "1.0-9", - "Source": "Repository", - "Title": "Gaussian Processes Modeling", - "Authors@R": "c( person(\"Blake\", \"MacDoanld\", role = \"aut\"), person(\"Hugh\", \"Chipman\", email = \"hugh.chipman@acadiau.ca\", role = c(\"aut\", \"cre\")), person(\"Chris\", \"Campbell\", email = \"ccampbell@mango-solutions.com\", role = \"ctb\"), person(\"Pritam\", \"Ranjan\", role = \"aut\"))", - "Author": "Blake MacDoanld [aut], Hugh Chipman [aut, cre], Chris Campbell [ctb], Pritam Ranjan [aut]", - "Maintainer": "Hugh Chipman ", - "Description": "A computationally stable approach of fitting a Gaussian Process (GP) model to a deterministic simulator.", - "Imports": [ - "lhs (>= 0.5)", - "lattice (>= 0.18-8)" - ], - "Suggests": [ - "testthat" - ], - "License": "GPL-2", - "NeedsCompilation": "no", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Repository": "RSPM" - }, - "ISOcodes": { - "Package": "ISOcodes", - "Version": "2025.05.18", - "Source": "Repository", - "Encoding": "UTF-8", - "Title": "Selected ISO Codes", - "Authors@R": "c(person(\"Christian\", \"Buchta\", role = \"aut\"), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")))", - "Description": "ISO language, territory, currency, script and character codes. Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.", - "Depends": [ - "R (>= 3.5.0)" - ], - "License": "GPL-2", - "LazyData": "yes", - "NeedsCompilation": "no", - "Author": "Christian Buchta [aut], Kurt Hornik [aut, cre] (ORCID: )", - "Maintainer": "Kurt Hornik ", - "Repository": "RSPM" - }, - "KernSmooth": { - "Package": "KernSmooth", - "Version": "2.23-26", - "Source": "Repository", - "Priority": "recommended", - "Date": "2024-12-10", - "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)", - "Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))", - "Note": "Maintainers are not available to give advice on using a package they did not author.", - "Depends": [ - "R (>= 2.5.0)", - "stats" - ], - "Suggests": [ - "MASS", - "carData" - ], - "Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".", - "License": "Unlimited", - "ByteCompile": "yes", - "NeedsCompilation": "yes", - "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN" - }, "MASS": { "Package": "MASS", "Version": "7.3-65", @@ -259,10 +96,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.7-3", + "Version": "1.7-4", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-03-05", + "Date": "2025-08-27", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -298,38 +135,38 @@ "BuildResaveData": "no", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, - "ModelMetrics": { - "Package": "ModelMetrics", - "Version": "1.2.2.2", + "MatrixModels": { + "Package": "MatrixModels", + "Version": "0.5-4", "Source": "Repository", - "Title": "Rapid Calculation of Model Metrics", - "Date": "2018-11-03", - "Authors@R": "person(\"Tyler\", \"Hunt\", email = \"thunt@snapfinance.com\", role = c(\"aut\", \"cre\"))", - "Description": "Collection of metrics for evaluating models written in C++ using 'Rcpp'. Popular metrics include area under the curve, log loss, root mean square error, etc.", + "VersionNote": "Released 0.5-3 on 2023-11-06", + "Date": "2025-03-25", + "Title": "Modelling with Sparse and Dense Matrices", + "Contact": "Matrix-authors@R-project.org", + "Authors@R": "c( person(\"Douglas\", \"Bates\", role = \"aut\", email = \"bates@stat.wisc.edu\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")))", + "Description": "Generalized Linear Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.", "Depends": [ - "R (>= 3.2.2)" - ], - "License": "GPL (>= 2)", - "Encoding": "UTF-8", - "LazyData": "true", - "LinkingTo": [ - "Rcpp" + "R (>= 3.6.0)" ], "Imports": [ - "Rcpp", - "data.table" + "stats", + "methods", + "Matrix (>= 1.6-0)", + "Matrix(< 1.8-0)" ], - "RoxygenNote": "6.0.1", - "Suggests": [ - "testthat" - ], - "NeedsCompilation": "yes", - "Author": "Tyler Hunt [aut, cre]", - "Maintainer": "Tyler Hunt ", + "ImportsNote": "_not_yet_stats4", + "Encoding": "UTF-8", + "LazyLoad": "yes", + "License": "GPL (>= 2)", + "URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61", + "BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61", + "NeedsCompilation": "no", + "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] ()", + "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, "R6": { @@ -358,24 +195,6 @@ "Maintainer": "Winston Chang ", "Repository": "CRAN" }, - "RApiSerialize": { - "Package": "RApiSerialize", - "Version": "0.1.4", - "Source": "Repository", - "Type": "Package", - "Title": "R API Serialization", - "Date": "2024-09-28", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Ei-ji\", \"Nakama\", role = \"aut\", comment = \"Code in package Rhpc\"), person(\"Junji\", \"Nakano\", role = \"aut\", comment = \"Code in package Rhpc\"), person(\"R Core\", role = \"aut\", comment = \"Code in R file src/main/serialize.c\"))", - "Description": "Access to the internal R serialization code is provided for use by other packages at the C function level by using the registration of native function mechanism. Client packages simply include a single header file RApiSerializeAPI.h provided by this package. This packages builds on the Rhpc package by Ei-ji Nakama and Junji Nakano which also includes a (partial) copy of the file src/main/serialize.c from R itself. The R Core group is the original author of the serialization code made available by this package.", - "URL": "https://github.com/eddelbuettel/rapiserialize, https://dirk.eddelbuettel.com/code/rapiserialize.html", - "BugReports": "https://github.com/eddelbuettel/rapiserialize/issues", - "License": "GPL (>= 2)", - "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Ei-ji Nakama [aut] (Code in package Rhpc), Junji Nakano [aut] (Code in package Rhpc), R Core [aut] (Code in R file src/main/serialize.c)", - "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "RColorBrewer": { "Package": "RColorBrewer", "Version": "1.1-3", @@ -391,8 +210,7 @@ "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.", "License": "Apache License 2.0", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "Rcpp": { "Package": "Rcpp", @@ -425,13 +243,13 @@ }, "RcppArmadillo": { "Package": "RcppArmadillo", - "Version": "14.6.0-1", + "Version": "15.0.1-1", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library", - "Date": "2025-07-02", + "Date": "2025-09-01", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))", - "Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14 so 'Armadillo' version 14.6.3 is included as a fallback when an R package forces the C++11 standard. Package authors should set a '#define' to select the 'current' version, or select the 'legacy' version (also chosen as default) if they must. See 'GitHub issue #475' for details. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Depends": [ @@ -459,156 +277,108 @@ "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, - "RcppEigen": { - "Package": "RcppEigen", - "Version": "0.3.4.0.2", + "SparseM": { + "Package": "SparseM", + "Version": "1.84-2", + "Source": "Repository", + "Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"rkoenker@uiuc.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"pin.ng@nau.edu\") , person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\") , person(\"Ben\", \"Shaby\", role = c(\"ctb\"), comment = \"author of chol2csr\") , person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"chol() tweaks; S4\", ORCID = \"0000-0002-8685-9910\")) )", + "Maintainer": "Roger Koenker ", + "Depends": [ + "R (>= 2.15)", + "methods" + ], + "Imports": [ + "graphics", + "stats", + "utils" + ], + "VignetteBuilder": "knitr", + "Suggests": [ + "knitr" + ], + "Description": "Some basic linear algebra functionality for sparse matrices is provided: including Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.", + "License": "GPL (>= 2)", + "Title": "Sparse Linear Algebra", + "URL": "http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html", + "NeedsCompilation": "yes", + "Author": "Roger Koenker [cre, aut], Pin Tian Ng [ctb] (Contributions to Sparse QR code), Yousef Saad [ctb] (author of sparskit2), Ben Shaby [ctb] (author of chol2csr), Martin Maechler [ctb] (chol() tweaks; S4, )", + "Repository": "CRAN" + }, + "TH.data": { + "Package": "TH.data", + "Version": "1.1-4", + "Source": "Repository", + "Title": "TH's Data Archive", + "Date": "2025-09-02", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\"))", + "Description": "Contains data sets used in other packages Torsten Hothorn maintains.", + "Depends": [ + "R (>= 3.5.0)", + "survival", + "MASS" + ], + "Suggests": [ + "trtf", + "tram", + "rms", + "coin", + "ATR", + "multcomp", + "gridExtra", + "vcd", + "colorspace", + "lattice", + "knitr", + "dplyr", + "openxlsx", + "plyr" + ], + "LazyData": "yes", + "VignetteBuilder": "knitr", + "License": "GPL-3", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre]", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" + }, + "V8": { + "Package": "V8", + "Version": "7.0.0", "Source": "Repository", "Type": "Package", - "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library", - "Date": "2024-08-23", - "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))", - "Copyright": "See the file COPYRIGHTS for various Eigen copyright details", - "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", - "License": "GPL (>= 2) | file LICENSE", - "LazyLoad": "yes", - "Depends": [ - "R (>= 3.6.0)" + "Title": "Embedded JavaScript and WebAssembly Engine for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))", + "Description": "An R interface to V8 : Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 version 6 and up or NodeJS when built as a shared library.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/V8", + "BugReports": "https://github.com/jeroen/v8/issues", + "SystemRequirements": "On Linux you can build against libv8-dev (Debian) or v8-devel (Fedora). We also provide static libv8 binaries for most platforms, see the README for details.", + "NeedsCompilation": "yes", + "VignetteBuilder": "knitr", + "Imports": [ + "Rcpp (>= 0.12.12)", + "jsonlite (>= 1.0)", + "curl (>= 1.0)", + "utils" ], "LinkingTo": [ "Rcpp" ], - "Imports": [ - "Rcpp (>= 0.11.0)", - "stats", - "utils" - ], "Suggests": [ - "Matrix", - "inline", - "tinytest", - "pkgKitten", - "microbenchmark" - ], - "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html", - "BugReports": "https://github.com/RcppCore/RcppEigen/issues", - "NeedsCompilation": "yes", - "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", - "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "RcppParallel": { - "Package": "RcppParallel", - "Version": "5.1.10", - "Source": "Repository", - "Type": "Package", - "Title": "Parallel Programming Tools for 'Rcpp'", - "Authors@R": "c( person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@rstudio.com\"), person(\"Romain\", \"Francois\", role = c(\"aut\", \"cph\")), person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\"), person(\"Gregory\", \"Vandenbrouck\", role = \"aut\"), person(\"Marcus\", \"Geelnard\", role = c(\"aut\", \"cph\"), comment = \"TinyThread library, https://tinythreadpp.bitsnbites.eu/\"), person(\"Hamada S.\", \"Badr\", email = \"badr@jhu.edu\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-9808-2344\")), person(family = \"Posit, PBC\", role = \"cph\"), person(family = \"Intel\", role = c(\"aut\", \"cph\"), comment = \"Intel TBB library, https://www.threadingbuildingblocks.org/\"), person(family = \"Microsoft\", role = \"cph\") )", - "Description": "High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial \"for\" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.", - "Depends": [ - "R (>= 3.0.2)" - ], - "Suggests": [ - "Rcpp", - "RUnit", + "testthat", "knitr", "rmarkdown" ], - "SystemRequirements": "GNU make, Intel TBB, Windows: cmd.exe and cscript.exe, Solaris: g++ is required", - "License": "GPL (>= 3)", - "URL": "https://rcppcore.github.io/RcppParallel/, https://github.com/RcppCore/RcppParallel", - "BugReports": "https://github.com/RcppCore/RcppParallel/issues", - "Biarch": "TRUE", - "RoxygenNote": "7.1.1", + "RoxygenNote": "7.3.1", + "Language": "en-US", "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]", - "Maintainer": "Kevin Ushey ", + "Biarch": "true", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Jan Marvin Garbuszus [ctb]", + "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, - "S7": { - "Package": "S7", - "Version": "0.2.0", - "Source": "Repository", - "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", - "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", - "Description": "A new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and the wider R community.", - "License": "MIT + file LICENSE", - "URL": "https://rconsortium.github.io/S7/, https://github.com/RConsortium/S7", - "BugReports": "https://github.com/RConsortium/S7/issues", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "utils" - ], - "Suggests": [ - "bench", - "callr", - "covr", - "knitr", - "methods", - "rmarkdown", - "testthat (>= 3.2.0)", - "tibble" - ], - "VignetteBuilder": "knitr", - "Config/build/compilation-database": "true", - "Config/Needs/website": "sloop", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "TRUE", - "Config/testthat/start-first": "external-generic", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (), Luke Tierney [aut], Hadley Wickham [aut, cre] ()", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, - "SQUAREM": { - "Package": "SQUAREM", - "Version": "2021.1", - "Source": "Repository", - "Date": "2021-01-12", - "Title": "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms", - "Description": "Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette(\"SQUAREM\"). Refer to the J Stat Software article: .", - "Depends": [ - "R (>= 3.0)" - ], - "Suggests": [ - "setRNG" - ], - "LazyLoad": "yes", - "License": "GPL (>= 2)", - "Author": "Ravi Varadhan", - "Maintainer": "Ravi Varadhan ", - "URL": "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html", - "Repository": "RSPM", - "NeedsCompilation": "no", - "Encoding": "UTF-8" - }, - "SnowballC": { - "Package": "SnowballC", - "Version": "0.7.1", - "Source": "Repository", - "Type": "Package", - "Date": "2023-04-25", - "Title": "Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library", - "Authors@R": "person(\"Milan\", \"Bouchet-Valat\", email=\"nalimilan@club.fr\", role=c(\"aut\", \"cre\"))", - "Description": "An R interface to the C 'libstemmer' library that implements Porter's word stemming algorithm for collapsing words to a common root to aid comparison of vocabulary. Currently supported languages are Arabic, Basque, Catalan, Danish, Dutch, English, Finnish, French, German, Greek, Hindi, Hungarian, Indonesian, Irish, Italian, Lithuanian, Nepali, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish, Tamil and Turkish.", - "License": "BSD_3_clause + file LICENSE", - "Copyright": "Dr Martin Porter (2001) and Richard Boulton (2004, 2005) for the 'libstemmer' C library, and Milan Bouchet-Valat (2013) for the R package contents.", - "URL": "https://github.com/nalimilan/R.TeMiS", - "BugReports": "https://github.com/nalimilan/R.TeMiS/issues", - "NeedsCompilation": "yes", - "Author": "Milan Bouchet-Valat [aut, cre]", - "Maintainer": "Milan Bouchet-Valat ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "askpass": { "Package": "askpass", "Version": "1.2.1", @@ -673,8 +443,34 @@ "License": "GPL-2 | GPL-3", "URL": "http://www.rforge.net/base64enc", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" + }, + "bigD": { + "Package": "bigD", + "Version": "0.3.1", + "Source": "Repository", + "Type": "Package", + "Title": "Flexibly Format Dates and Times to a Given Locale", + "Description": "Format dates and times flexibly and to whichever locales make sense. Parses dates, times, and date-times in various formats (including string-based ISO 8601 constructions). The formatting syntax gives the user many options for formatting the date and time output in a precise manner. Time zones in the input can be expressed in multiple ways and there are many options for formatting time zones in the output as well. Several of the provided helper functions allow for automatic generation of locale-aware formatting patterns based on date/time skeleton formats and standardized date/time formats with varying specificity.", + "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Olivier\", \"Roy\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/bigD/, https://github.com/rstudio/bigD", + "BugReports": "https://github.com/rstudio/bigD/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Depends": [ + "R (>= 3.6.0)" + ], + "Suggests": [ + "testthat (>= 3.0.0)", + "vctrs (>= 0.5.0)" + ], + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "NeedsCompilation": "no", + "Author": "Richard Iannone [aut, cre] (), Olivier Roy [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Richard Iannone ", + "Repository": "CRAN" }, "bit": { "Package": "bit", @@ -743,6 +539,23 @@ "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, + "bitops": { + "Package": "bitops", + "Version": "1.0-9", + "Source": "Repository", + "Date": "2024-10-03", + "Authors@R": "c( person(\"Steve\", \"Dutky\", role = \"aut\", email = \"sdutky@terpalum.umd.edu\", comment = \"S original; then (after MM's port) revised and modified\"), person(\"Martin\", \"Maechler\", role = c(\"cre\", \"aut\"), email = \"maechler@stat.math.ethz.ch\", comment = c(\"Initial R port; tweaks\", ORCID = \"0000-0002-8685-9910\")))", + "Title": "Bitwise Operations", + "Description": "Functions for bitwise operations on integer vectors.", + "License": "GPL (>= 2)", + "URL": "https://github.com/mmaechler/R-bitops", + "BugReports": "https://github.com/mmaechler/R-bitops/issues", + "NeedsCompilation": "yes", + "Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, )", + "Maintainer": "Martin Maechler ", + "Repository": "CRAN", + "Encoding": "UTF-8" + }, "blob": { "Package": "blob", "Version": "1.2.4", @@ -774,19 +587,46 @@ "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, + "boot": { + "Package": "boot", + "Version": "1.3-32", + "Source": "Repository", + "Priority": "recommended", + "Date": "2025-08-29", + "Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\", comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"Brian.Ripley@R-project.org\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))", + "Maintainer": "Alessandra R. Brazzale ", + "Note": "Maintainers are not available to give advice on using a package they did not author.", + "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.", + "Title": "Bootstrap Functions", + "Depends": [ + "R (>= 3.0.0)", + "graphics", + "stats" + ], + "Suggests": [ + "MASS", + "survival" + ], + "LazyData": "yes", + "ByteCompile": "yes", + "License": "Unlimited", + "NeedsCompilation": "no", + "Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. Brazzale [ctb, cre] (minor bug fixes)", + "Repository": "CRAN" + }, "broom": { "Package": "broom", - "Version": "1.0.8", + "Version": "1.0.9", "Source": "Repository", "Type": "Package", "Title": "Convert Statistical Objects into Tidy Tibbles", - "Authors@R": "c(person(given = \"David\", family = \"Robinson\", role = \"aut\", email = \"admiral.david@gmail.com\"), person(given = \"Alex\", family = \"Hayes\", role = \"aut\", email = \"alexpghayes@gmail.com\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(given = \"Simon\", family = \"Couch\", role = c(\"aut\", \"cre\"), email = \"simon.couch@posit.co\", comment = c(ORCID = \"0000-0001-5676-5107\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"ctb\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Derek\", family = \"Chiu\", role = \"ctb\", email = \"dchiu@bccrc.ca\"), person(given = 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person(given = \"Steven\", family = \"Pav\", role = \"ctb\", email = \"shabbychef@gmail.com\"), person(given = \"Paul\", family = \"PJ\", role = \"ctb\", email = \"pjpaul.stephens@gmail.com\"), person(given = \"Ben\", family = \"Schneider\", role = \"ctb\", email = \"benjamin.julius.schneider@gmail.com\"), person(given = \"Patrick\", family = \"Kennedy\", role = \"ctb\", email = \"pkqstr@protonmail.com\"), person(given = \"Lily\", family = \"Medina\", role = \"ctb\", email = \"lilymiru@gmail.com\"), person(given = \"Brian\", family = \"Fannin\", role = \"ctb\", email = \"captain@pirategrunt.com\"), person(given = \"Jason\", family = \"Muhlenkamp\", role = \"ctb\", email = \"jason.muhlenkamp@gmail.com\"), person(given = \"Matt\", family = \"Lehman\", role = \"ctb\"), person(given = \"Bill\", family = \"Denney\", role = \"ctb\", email = \"wdenney@humanpredictions.com\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(given = \"Nic\", family = \"Crane\", role = \"ctb\"), person(given = \"Andrew\", family = \"Bates\", role = \"ctb\"), person(given = \"Vincent\", family = \"Arel-Bundock\", role = \"ctb\", email = \"vincent.arel-bundock@umontreal.ca\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Hideaki\", family = \"Hayashi\", role = \"ctb\"), person(given = \"Luis\", family = \"Tobalina\", role = \"ctb\"), person(given = \"Annie\", family = \"Wang\", role = \"ctb\", email = \"anniewang.uc@gmail.com\"), person(given = \"Wei Yang\", family = \"Tham\", role = \"ctb\", email = \"weiyang.tham@gmail.com\"), person(given = \"Clara\", family = \"Wang\", role = \"ctb\", email = \"clara.wang.94@gmail.com\"), person(given = \"Abby\", family = \"Smith\", role = \"ctb\", email = \"als1@u.northwestern.edu\", comment = c(ORCID = \"0000-0002-3207-0375\")), person(given = \"Jasper\", family = \"Cooper\", role = \"ctb\", email = \"jaspercooper@gmail.com\", comment = c(ORCID = \"0000-0002-8639-3188\")), person(given = \"E Auden\", family = \"Krauska\", role = \"ctb\", email = \"krauskae@gmail.com\", comment = c(ORCID = \"0000-0002-1466-5850\")), person(given = \"Alex\", family = \"Wang\", role = \"ctb\", email = \"x249wang@uwaterloo.ca\"), person(given = \"Malcolm\", family = \"Barrett\", role = \"ctb\", email = \"malcolmbarrett@gmail.com\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(given = \"Charles\", family = \"Gray\", role = \"ctb\", email = \"charlestigray@gmail.com\", comment = c(ORCID = \"0000-0002-9978-011X\")), person(given = \"Jared\", family = \"Wilber\", role = \"ctb\"), person(given = \"Vilmantas\", family = \"Gegzna\", role = \"ctb\", email = \"GegznaV@gmail.com\", comment = c(ORCID = \"0000-0002-9500-5167\")), person(given = \"Eduard\", family = \"Szoecs\", role = \"ctb\", email = \"eduardszoecs@gmail.com\"), person(given = \"Frederik\", family = \"Aust\", role = \"ctb\", email = \"frederik.aust@uni-koeln.de\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(given = \"Angus\", family = \"Moore\", role = \"ctb\", email = \"angusmoore9@gmail.com\"), person(given = \"Nick\", family = \"Williams\", role = \"ctb\", email = \"ntwilliams.personal@gmail.com\"), person(given = \"Marius\", family = \"Barth\", role = \"ctb\", email = \"marius.barth.uni.koeln@gmail.com\", comment = c(ORCID = \"0000-0002-3421-6665\")), person(given = \"Bruna\", family = \"Wundervald\", role = \"ctb\", email = \"brunadaviesw@gmail.com\", comment = c(ORCID = \"0000-0001-8163-220X\")), person(given = \"Joyce\", family = \"Cahoon\", role = \"ctb\", email = \"joyceyu48@gmail.com\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(given = \"Grant\", family = \"McDermott\", role = \"ctb\", email = \"grantmcd@uoregon.edu\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(given = \"Kevin\", family = \"Zarca\", role = \"ctb\", email = \"kevin.zarca@gmail.com\"), person(given = \"Shiro\", family = \"Kuriwaki\", role = \"ctb\", email = \"shirokuriwaki@gmail.com\", comment = c(ORCID = \"0000-0002-5687-2647\")), person(given = \"Lukas\", family = \"Wallrich\", role = \"ctb\", email = \"lukas.wallrich@gmail.com\", comment = c(ORCID = \"0000-0003-2121-5177\")), person(given = \"James\", family = \"Martherus\", role = \"ctb\", email = \"james@martherus.com\", comment = c(ORCID = \"0000-0002-8285-3300\")), person(given = \"Chuliang\", family = \"Xiao\", role = \"ctb\", email = \"cxiao@umich.edu\", comment = c(ORCID = \"0000-0002-8466-9398\")), person(given = \"Joseph\", family = \"Larmarange\", role = \"ctb\", email = \"joseph@larmarange.net\"), person(given = \"Max\", family = \"Kuhn\", role = \"ctb\", email = \"max@posit.co\"), person(given = \"Michal\", family = \"Bojanowski\", role = \"ctb\", email = \"michal2992@gmail.com\"), person(given = \"Hakon\", family = \"Malmedal\", role = \"ctb\", email = \"hmalmedal@gmail.com\"), person(given = \"Clara\", family = \"Wang\", role = \"ctb\"), person(given = \"Sergio\", family = \"Oller\", role = \"ctb\", email = \"sergioller@gmail.com\"), person(given = \"Luke\", family = \"Sonnet\", role = \"ctb\", email = \"luke.sonnet@gmail.com\"), person(given = \"Jim\", family = \"Hester\", role = \"ctb\", email = \"jim.hester@posit.co\"), person(given = \"Ben\", family = \"Schneider\", role = \"ctb\", email = \"benjamin.julius.schneider@gmail.com\"), person(given = \"Bernie\", family = \"Gray\", role = \"ctb\", email = \"bfgray3@gmail.com\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(given = \"Mara\", family = \"Averick\", role = \"ctb\", email = \"mara@posit.co\"), person(given = \"Aaron\", family = \"Jacobs\", role = \"ctb\", email = \"atheriel@gmail.com\"), person(given = \"Andreas\", family = \"Bender\", role = \"ctb\", email = \"bender.at.R@gmail.com\"), person(given = \"Sven\", family = \"Templer\", role = \"ctb\", email = \"sven.templer@gmail.com\"), person(given = \"Paul-Christian\", family = \"Buerkner\", role = \"ctb\", email = \"paul.buerkner@gmail.com\"), person(given = \"Matthew\", family = \"Kay\", role = \"ctb\", email = \"mjskay@umich.edu\"), person(given = \"Erwan\", family = \"Le Pennec\", role = \"ctb\", email = \"lepennec@gmail.com\"), person(given = \"Johan\", family = \"Junkka\", role = \"ctb\", email = \"johan.junkka@umu.se\"), person(given = \"Hao\", family = \"Zhu\", role = \"ctb\", email = \"haozhu233@gmail.com\"), person(given = \"Benjamin\", family = \"Soltoff\", role = \"ctb\", email = \"soltoffbc@uchicago.edu\"), person(given = \"Zoe\", family = \"Wilkinson Saldana\", role = \"ctb\", email = \"zoewsaldana@gmail.com\"), person(given = \"Tyler\", family = \"Littlefield\", role = \"ctb\", email = \"tylurp1@gmail.com\"), person(given = \"Charles T.\", family = \"Gray\", role = \"ctb\", email = \"charlestigray@gmail.com\"), person(given = \"Shabbh E.\", family = \"Banks\", role = \"ctb\"), person(given = \"Serina\", family = \"Robinson\", role = \"ctb\", email = \"robi0916@umn.edu\"), person(given = \"Roger\", family = \"Bivand\", role = \"ctb\", email = \"Roger.Bivand@nhh.no\"), person(given = \"Riinu\", family = \"Ots\", role = \"ctb\", email = \"riinuots@gmail.com\"), person(given = \"Nicholas\", family = \"Williams\", role = \"ctb\", email = \"ntwilliams.personal@gmail.com\"), person(given = \"Nina\", family = \"Jakobsen\", role = \"ctb\"), person(given = \"Michael\", family = \"Weylandt\", role = \"ctb\", email = \"michael.weylandt@gmail.com\"), person(given = \"Lisa\", family = \"Lendway\", role = \"ctb\", email = \"llendway@macalester.edu\"), person(given = \"Karl\", family = \"Hailperin\", role = \"ctb\", email = \"khailper@gmail.com\"), person(given = \"Josue\", family = \"Rodriguez\", role = \"ctb\", email = \"jerrodriguez@ucdavis.edu\"), person(given = \"Jenny\", family = \"Bryan\", role = \"ctb\", email = \"jenny@posit.co\"), person(given = \"Chris\", family = \"Jarvis\", role = \"ctb\", email = \"Christopher1.jarvis@gmail.com\"), person(given = \"Greg\", family = \"Macfarlane\", role = \"ctb\", email = \"gregmacfarlane@gmail.com\"), person(given = \"Brian\", family = \"Mannakee\", role = \"ctb\", email = \"bmannakee@gmail.com\"), person(given = \"Drew\", family = \"Tyre\", role = \"ctb\", email = \"atyre2@unl.edu\"), person(given = \"Shreyas\", family = \"Singh\", role = \"ctb\", email = \"shreyas.singh.298@gmail.com\"), person(given = \"Laurens\", family = \"Geffert\", role = \"ctb\", email = \"laurensgeffert@gmail.com\"), person(given = \"Hong\", family = \"Ooi\", role = \"ctb\", email = \"hongooi@microsoft.com\"), person(given = \"Henrik\", family = \"Bengtsson\", role = \"ctb\", email = \"henrikb@braju.com\"), person(given = \"Eduard\", family = \"Szocs\", role = \"ctb\", email = \"eduardszoecs@gmail.com\"), person(given = \"David\", family = \"Hugh-Jones\", role = \"ctb\", email = \"davidhughjones@gmail.com\"), person(given = \"Matthieu\", family = \"Stigler\", role = \"ctb\", email = \"Matthieu.Stigler@gmail.com\"), person(given = \"Hugo\", family = \"Tavares\", role = \"ctb\", email = \"hm533@cam.ac.uk\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(given = \"R. Willem\", family = \"Vervoort\", role = \"ctb\", email = \"Willemvervoort@gmail.com\"), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"ctb\", email = \"brenton@wiernik.org\"), person(given = \"Josh\", family = \"Yamamoto\", role = \"ctb\", email = \"joshuayamamoto5@gmail.com\"), person(given = \"Jasme\", family = \"Lee\", role = \"ctb\"), person(given = \"Taren\", family = \"Sanders\", role = \"ctb\", email = \"taren.sanders@acu.edu.au\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(given = \"Ilaria\", family = \"Prosdocimi\", role = \"ctb\", email = \"prosdocimi.ilaria@gmail.com\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(given = \"Daniel D.\", family = \"Sjoberg\", role = \"ctb\", email = \"danield.sjoberg@gmail.com\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(given = \"Alex\", family = \"Reinhart\", role = \"ctb\", email = \"areinhar@stat.cmu.edu\", comment = c(ORCID = \"0000-0002-6658-514X\")))", - "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", + "Authors@R": "c( person(\"David\", \"Robinson\", , \"admiral.david@gmail.com\", role = \"aut\"), person(\"Alex\", \"Hayes\", , \"alexpghayes@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5676-5107\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Derek\", \"Chiu\", , \"dchiu@bccrc.ca\", role = \"ctb\"), person(\"Matthieu\", \"Gomez\", , \"mattg@princeton.edu\", role = \"ctb\"), person(\"Boris\", \"Demeshev\", , \"boris.demeshev@gmail.com\", role = \"ctb\"), person(\"Dieter\", \"Menne\", , \"dieter.menne@menne-biomed.de\", role = \"ctb\"), person(\"Benjamin\", \"Nutter\", , \"nutter@battelle.org\", role = \"ctb\"), person(\"Luke\", \"Johnston\", , \"luke.johnston@mail.utoronto.ca\", role = \"ctb\"), person(\"Ben\", \"Bolker\", , \"bolker@mcmaster.ca\", role = \"ctb\"), person(\"Francois\", \"Briatte\", , \"f.briatte@gmail.com\", role = \"ctb\"), person(\"Jeffrey\", \"Arnold\", , \"jeffrey.arnold@gmail.com\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", , \"jsg2201@columbia.edu\", role = \"ctb\"), person(\"Luciano\", \"Selzer\", , \"luciano.selzer@gmail.com\", role = \"ctb\"), person(\"Gavin\", \"Simpson\", , \"ucfagls@gmail.com\", role = \"ctb\"), person(\"Jens\", \"Preussner\", , \"jens.preussner@mpi-bn.mpg.de\", role = \"ctb\"), person(\"Jay\", \"Hesselberth\", , \"jay.hesselberth@gmail.com\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"ctb\"), person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = \"ctb\"), person(\"Alessandro\", \"Gasparini\", , \"ag475@leicester.ac.uk\", role = \"ctb\"), person(\"Lukasz\", \"Komsta\", , \"lukasz.komsta@umlub.pl\", role = \"ctb\"), person(\"Frederick\", \"Novometsky\", role = \"ctb\"), person(\"Wilson\", \"Freitas\", role = \"ctb\"), person(\"Michelle\", \"Evans\", role = \"ctb\"), person(\"Jason Cory\", \"Brunson\", , \"cornelioid@gmail.com\", role = \"ctb\"), person(\"Simon\", \"Jackson\", , \"drsimonjackson@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Whalley\", , \"ben.whalley@plymouth.ac.uk\", role = \"ctb\"), person(\"Karissa\", \"Whiting\", , \"karissa.whiting@gmail.com\", role = \"ctb\"), person(\"Yves\", \"Rosseel\", , \"yrosseel@gmail.com\", role = \"ctb\"), person(\"Michael\", \"Kuehn\", , \"mkuehn10@gmail.com\", role = \"ctb\"), person(\"Jorge\", \"Cimentada\", , \"cimentadaj@gmail.com\", role = \"ctb\"), person(\"Erle\", \"Holgersen\", , \"erle.holgersen@gmail.com\", role = \"ctb\"), person(\"Karl\", \"Dunkle Werner\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0523-7309\")), person(\"Ethan\", \"Christensen\", , \"christensen.ej@gmail.com\", role = \"ctb\"), person(\"Steven\", \"Pav\", , \"shabbychef@gmail.com\", role = \"ctb\"), person(\"Paul\", \"PJ\", , \"pjpaul.stephens@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Patrick\", \"Kennedy\", , \"pkqstr@protonmail.com\", role = \"ctb\"), person(\"Lily\", \"Medina\", , \"lilymiru@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Fannin\", , \"captain@pirategrunt.com\", role = \"ctb\"), person(\"Jason\", \"Muhlenkamp\", , \"jason.muhlenkamp@gmail.com\", role = \"ctb\"), person(\"Matt\", \"Lehman\", role = \"ctb\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Nic\", \"Crane\", role = \"ctb\"), person(\"Andrew\", \"Bates\", role = \"ctb\"), person(\"Vincent\", \"Arel-Bundock\", , \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Hideaki\", \"Hayashi\", role = \"ctb\"), person(\"Luis\", \"Tobalina\", role = \"ctb\"), person(\"Annie\", \"Wang\", , \"anniewang.uc@gmail.com\", role = \"ctb\"), person(\"Wei Yang\", \"Tham\", , \"weiyang.tham@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", , \"clara.wang.94@gmail.com\", role = \"ctb\"), person(\"Abby\", \"Smith\", , \"als1@u.northwestern.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3207-0375\")), person(\"Jasper\", \"Cooper\", , \"jaspercooper@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8639-3188\")), person(\"E Auden\", \"Krauska\", , \"krauskae@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1466-5850\")), person(\"Alex\", \"Wang\", , \"x249wang@uwaterloo.ca\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Charles\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9978-011X\")), person(\"Jared\", \"Wilber\", role = \"ctb\"), person(\"Vilmantas\", \"Gegzna\", , \"GegznaV@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9500-5167\")), person(\"Eduard\", \"Szoecs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Angus\", \"Moore\", , \"angusmoore9@gmail.com\", role = \"ctb\"), person(\"Nick\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Marius\", \"Barth\", , \"marius.barth.uni.koeln@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3421-6665\")), person(\"Bruna\", \"Wundervald\", , \"brunadaviesw@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8163-220X\")), person(\"Joyce\", \"Cahoon\", , \"joyceyu48@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(\"Grant\", \"McDermott\", , \"grantmcd@uoregon.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(\"Kevin\", \"Zarca\", , \"kevin.zarca@gmail.com\", role = \"ctb\"), person(\"Shiro\", \"Kuriwaki\", , \"shirokuriwaki@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5687-2647\")), person(\"Lukas\", \"Wallrich\", , \"lukas.wallrich@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2121-5177\")), person(\"James\", \"Martherus\", , \"james@martherus.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8285-3300\")), person(\"Chuliang\", \"Xiao\", , \"cxiao@umich.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8466-9398\")), person(\"Joseph\", \"Larmarange\", , \"joseph@larmarange.net\", role = \"ctb\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", , \"michal2992@gmail.com\", role = \"ctb\"), person(\"Hakon\", \"Malmedal\", , \"hmalmedal@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", role = \"ctb\"), person(\"Sergio\", \"Oller\", , \"sergioller@gmail.com\", role = \"ctb\"), person(\"Luke\", \"Sonnet\", , \"luke.sonnet@gmail.com\", role = \"ctb\"), person(\"Jim\", \"Hester\", , \"jim.hester@posit.co\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Bernie\", \"Gray\", , \"bfgray3@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(\"Mara\", \"Averick\", , \"mara@posit.co\", role = \"ctb\"), person(\"Aaron\", \"Jacobs\", , \"atheriel@gmail.com\", role = \"ctb\"), person(\"Andreas\", \"Bender\", , \"bender.at.R@gmail.com\", role = \"ctb\"), person(\"Sven\", \"Templer\", , \"sven.templer@gmail.com\", role = \"ctb\"), person(\"Paul-Christian\", \"Buerkner\", , \"paul.buerkner@gmail.com\", role = \"ctb\"), person(\"Matthew\", \"Kay\", , \"mjskay@umich.edu\", role = \"ctb\"), person(\"Erwan\", \"Le Pennec\", , \"lepennec@gmail.com\", role = \"ctb\"), person(\"Johan\", \"Junkka\", , \"johan.junkka@umu.se\", role = \"ctb\"), person(\"Hao\", \"Zhu\", , \"haozhu233@gmail.com\", role = \"ctb\"), person(\"Benjamin\", \"Soltoff\", , \"soltoffbc@uchicago.edu\", role = \"ctb\"), person(\"Zoe\", \"Wilkinson Saldana\", , \"zoewsaldana@gmail.com\", role = \"ctb\"), person(\"Tyler\", \"Littlefield\", , \"tylurp1@gmail.com\", role = \"ctb\"), person(\"Charles T.\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\"), person(\"Shabbh E.\", \"Banks\", role = \"ctb\"), person(\"Serina\", \"Robinson\", , \"robi0916@umn.edu\", role = \"ctb\"), person(\"Roger\", \"Bivand\", , \"Roger.Bivand@nhh.no\", role = \"ctb\"), person(\"Riinu\", \"Ots\", , \"riinuots@gmail.com\", role = \"ctb\"), person(\"Nicholas\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Nina\", \"Jakobsen\", role = \"ctb\"), person(\"Michael\", \"Weylandt\", , \"michael.weylandt@gmail.com\", role = \"ctb\"), person(\"Lisa\", \"Lendway\", , \"llendway@macalester.edu\", role = \"ctb\"), person(\"Karl\", \"Hailperin\", , \"khailper@gmail.com\", role = \"ctb\"), person(\"Josue\", \"Rodriguez\", , \"jerrodriguez@ucdavis.edu\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", , \"jenny@posit.co\", role = \"ctb\"), person(\"Chris\", \"Jarvis\", , \"Christopher1.jarvis@gmail.com\", role = \"ctb\"), person(\"Greg\", \"Macfarlane\", , \"gregmacfarlane@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Mannakee\", , \"bmannakee@gmail.com\", role = \"ctb\"), person(\"Drew\", \"Tyre\", , \"atyre2@unl.edu\", role = \"ctb\"), person(\"Shreyas\", \"Singh\", , \"shreyas.singh.298@gmail.com\", role = \"ctb\"), person(\"Laurens\", \"Geffert\", , \"laurensgeffert@gmail.com\", role = \"ctb\"), person(\"Hong\", \"Ooi\", , \"hongooi@microsoft.com\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"ctb\"), person(\"Eduard\", \"Szocs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", , \"davidhughjones@gmail.com\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", , \"Matthieu.Stigler@gmail.com\", role = \"ctb\"), person(\"Hugo\", \"Tavares\", , \"hm533@cam.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(\"R. Willem\", \"Vervoort\", , \"Willemvervoort@gmail.com\", role = \"ctb\"), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"ctb\"), person(\"Josh\", \"Yamamoto\", , \"joshuayamamoto5@gmail.com\", role = \"ctb\"), person(\"Jasme\", \"Lee\", role = \"ctb\"), person(\"Taren\", \"Sanders\", , \"taren.sanders@acu.edu.au\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(\"Ilaria\", \"Prosdocimi\", , \"prosdocimi.ilaria@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Alex\", \"Reinhart\", , \"areinhar@stat.cmu.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6658-514X\")) )", + "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", "License": "MIT + file LICENSE", "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom", "BugReports": "https://github.com/tidymodels/broom/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 4.1)" ], "Imports": [ "backports", @@ -820,7 +660,7 @@ "drc", "e1071", "emmeans", - "epiR", + "epiR (>= 2.0.85)", "ergm (>= 3.10.4)", "fixest (>= 0.9.0)", "gam (>= 1.15)", @@ -831,8 +671,8 @@ "glmnetUtils", "gmm", "Hmisc", - "irlba", "interp", + "irlba", "joineRML", "Kendall", "knitr", @@ -871,8 +711,8 @@ "robustbase", "rsample", "sandwich", - "spdep (>= 1.1)", "spatialreg", + "spdep (>= 1.1)", "speedglm", "spelling", "survey", @@ -885,13 +725,14 @@ ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", - 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"Author": "David Robinson [aut], Alex Hayes [aut] (), Simon Couch [aut, cre] (), Posit Software, PBC [cph, fnd], Indrajeet Patil [ctb] (), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (), Jasper Cooper [ctb] (), E Auden Krauska [ctb] (), Alex Wang [ctb], Malcolm Barrett [ctb] (), Charles Gray [ctb] (), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (), Eduard Szoecs [ctb], Frederik Aust [ctb] (), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (), Bruna Wundervald [ctb] (), Joyce Cahoon [ctb] (), Grant McDermott [ctb] (), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (), Lukas Wallrich [ctb] (), James Martherus [ctb] (), Chuliang Xiao [ctb] (), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (), Ilaria Prosdocimi [ctb] (), Daniel D. Sjoberg [ctb] (), Alex Reinhart [ctb] ()", + "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. Sjoberg [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", "Maintainer": "Simon Couch ", "Repository": "CRAN" }, @@ -954,82 +795,30 @@ "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, - "butcher": { - "Package": "butcher", - "Version": "0.3.5", + "caTools": { + "Package": "caTools", + "Version": "1.18.3", "Source": "Repository", - "Title": "Model Butcher", - "Authors@R": "c( person(\"Joyce\", \"Cahoon\", , \"joyceyu48@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Alex\", \"Hayes\", , \"alexpghayes@gmail.com\", role = \"aut\"), person(\"Julia\", \"Silge\", , \"julia.silge@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-3671-836X\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides a set of S3 generics to axe components of fitted model objects and help reduce the size of model objects saved to disk.", - "License": "MIT + file LICENSE", - "URL": "https://butcher.tidymodels.org/, https://github.com/tidymodels/butcher", - "BugReports": "https://github.com/tidymodels/butcher/issues", + "Type": "Package", + "Title": "Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc", + "Date": "2024-09-04", + "Authors@R": "c(person(given = \"Jarek\", family = \"Tuszynski\", role = \"aut\", email = \"jaroslaw.w.tuszynski@saic.com\"), person(given = \"Michael\", family = \"Dietze\", role = \"cre\", email = \"michael.dietze@uni-goettingen.de\"))", + "Maintainer": "Michael Dietze ", "Depends": [ "R (>= 3.6.0)" ], "Imports": [ - "cli (>= 3.3.0)", - "lobstr (>= 1.1.2)", - "methods", - "purrr (>= 0.3.4)", - "rlang (>= 1.0.2)", - "tibble (>= 3.1.7)", - "utils", - "vctrs (>= 0.4.1)" + "bitops" ], "Suggests": [ - "C50", - "caret", - "ClusterR", - "clustMixType", - "covr", - "dbarts", - "ddalpha", - "dplyr", - "e1071", - "earth", - "flexsurv", - "fs", - "ipred", - "kernlab", - "kknn", - "klaR", - "knitr", "MASS", - "mda", - "mgcv", - "modeldata", - "nnet", - "parsnip (>= 0.1.6)", - "pkgload", - "pls", - "QSARdata", - "randomForest", - "ranger", - "RANN", - "recipes (>= 0.2.0)", - "rmarkdown", - "rpart", - "rsample", - "RSpectra", - "sparklyr", - "survival (>= 3.2-10)", - "testthat (>= 3.0.0)", - "TH.data", - "usethis (>= 1.5.0)", - "xgboost (>= 1.3.2.1)", - "xrf" + "rpart" ], - "VignetteBuilder": "knitr", - "Config/Needs/check": "bioc::mixOmics", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Joyce Cahoon [aut] (), Davis Vaughan [aut], Max Kuhn [aut], Alex Hayes [aut], Julia Silge [cre, aut] (), Posit, PBC [cph, fnd]", - "Maintainer": "Julia Silge ", - "Repository": "CRAN" + "Description": "Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.", + "License": "GPL-3", + "NeedsCompilation": "yes", + "Repository": "CRAN", + "Author": "Jarek Tuszynski [aut], Michael Dietze [cre]" }, "cachem": { "Package": "cachem", @@ -1095,78 +884,6 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, - "caret": { - "Package": "caret", - "Version": "7.0-1", - "Source": "Repository", - "Title": "Classification and Regression Training", - "Authors@R": "c(person(given = \"Max\", family = \"Kuhn\", role = c(\"aut\", \"cre\"), email = \"mxkuhn@gmail.com\", comment = c(ORCID = \"0000-0003-2402-136X\")), person(given = \"Jed\", family = \"Wing\", role = \"ctb\"), person(given = \"Steve\", family = \"Weston\", role = \"ctb\"), person(given = \"Andre\", family = \"Williams\", role = \"ctb\"), person(given = \"Chris\", family = \"Keefer\", role = \"ctb\"), person(given = \"Allan\", family = \"Engelhardt\", role = \"ctb\"), person(given = \"Tony\", family = \"Cooper\", role = \"ctb\"), person(given = \"Zachary\", family = \"Mayer\", role = \"ctb\"), person(given = \"Brenton\", family = \"Kenkel\", role = \"ctb\"), person(given = \"R Core Team\", role = \"ctb\"), person(given = \"Michael\", family = \"Benesty\", role = \"ctb\"), person(given = \"Reynald\", family = \"Lescarbeau\", role = \"ctb\"), person(given = \"Andrew\", family = \"Ziem\", role = \"ctb\"), person(given = \"Luca\", family = \"Scrucca\", role = \"ctb\"), person(given = \"Yuan\", family = \"Tang\", role = \"ctb\"), person(given = \"Can\", family = \"Candan\", role = \"ctb\"), person(given = \"Tyler\", family = \"Hunt\", role = \"ctb\"))", - "Description": "Misc functions for training and plotting classification and regression models.", - "License": "GPL (>= 2)", - "URL": "https://github.com/topepo/caret/", - "BugReports": "https://github.com/topepo/caret/issues", - "Depends": [ - "ggplot2", - "lattice (>= 0.20)", - "R (>= 3.2.0)" - ], - "Imports": [ - "e1071", - "foreach", - "grDevices", - "methods", - "ModelMetrics (>= 1.2.2.2)", - "nlme", - "plyr", - "pROC", - "recipes (>= 0.1.10)", - "reshape2", - "stats", - "stats4", - "utils", - "withr (>= 2.0.0)" - ], - "Suggests": [ - "BradleyTerry2", - "covr", - "Cubist", - "dplyr", - "earth (>= 2.2-3)", - "ellipse", - "fastICA", - "gam (>= 1.15)", - "ipred", - "kernlab", - "klaR", - "knitr", - "MASS", - "Matrix", - "mda", - "mgcv", - "mlbench", - "MLmetrics", - "nnet", - "pamr", - "party (>= 0.9-99992)", - "pls", - "proxy", - "randomForest", - "RANN", - "rmarkdown", - "rpart", - "spls", - "superpc", - "testthat (>= 0.9.1)", - "themis (>= 0.1.3)" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Max Kuhn [aut, cre] (), Jed Wing [ctb], Steve Weston [ctb], Andre Williams [ctb], Chris Keefer [ctb], Allan Engelhardt [ctb], Tony Cooper [ctb], Zachary Mayer [ctb], Brenton Kenkel [ctb], R Core Team [ctb], Michael Benesty [ctb], Reynald Lescarbeau [ctb], Andrew Ziem [ctb], Luca Scrucca [ctb], Yuan Tang [ctb], Can Candan [ctb], Tyler Hunt [ctb]", - "Maintainer": "Max Kuhn ", - "Repository": "CRAN" - }, "cellranger": { "Package": "cellranger", "Version": "1.1.0", @@ -1199,31 +916,6 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, - "class": { - "Package": "class", - "Version": "7.3-23", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-01-01", - "Depends": [ - "R (>= 3.0.0)", - "stats", - "utils" - ], - "Imports": [ - "MASS" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", - "Description": "Various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.", - "Title": "Functions for Classification", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN" - }, "cli": { "Package": "cli", "Version": "3.6.5", @@ -1302,52 +994,6 @@ "Maintainer": "Matthew Lincoln ", "Repository": "CRAN" }, - "clock": { - "Package": "clock", - "Version": "0.7.3", - "Source": "Repository", - "Title": "Date-Time Types and Tools", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides a comprehensive library for date-time manipulations using a new family of orthogonal date-time classes (durations, time points, zoned-times, and calendars) that partition responsibilities so that the complexities of time zones are only considered when they are really needed. Capabilities include: date-time parsing, formatting, arithmetic, extraction and updating of components, and rounding.", - "License": "MIT + file LICENSE", - "URL": "https://clock.r-lib.org, https://github.com/r-lib/clock", - "BugReports": "https://github.com/r-lib/clock/issues", - "Depends": [ - "R (>= 4.0.0)" - ], - "Imports": [ - "cli (>= 3.6.4)", - "lifecycle (>= 1.0.4)", - "rlang (>= 1.1.5)", - "tzdb (>= 0.5.0)", - "vctrs (>= 0.6.5)" - ], - "Suggests": [ - "covr", - "knitr", - "magrittr", - "pillar", - "rmarkdown", - "slider (>= 0.3.2)", - "testthat (>= 3.0.0)", - "withr" - ], - "LinkingTo": [ - "cpp11 (>= 0.5.2)", - "tzdb (>= 0.5.0)" - ], - "VignetteBuilder": "knitr", - "Config/build/compilation-database": "true", - "Config/Needs/website": "lubridate, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Davis Vaughan [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Davis Vaughan ", - "Repository": "RSPM" - }, "codetools": { "Package": "codetools", "Version": "0.2-20", @@ -1389,6 +1035,37 @@ "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, + "confintr": { + "Package": "confintr", + "Version": "1.0.2", + "Source": "Repository", + "Title": "Confidence Intervals", + "Authors@R": "person(\"Michael\", \"Mayer\", , \"mayermichael79@gmail.com\", role = c(\"aut\", \"cre\"))", + "Description": "Calculates classic and/or bootstrap confidence intervals for many parameters such as the population mean, variance, interquartile range (IQR), median absolute deviation (MAD), skewness, kurtosis, Cramer's V, odds ratio, R-squared, quantiles (incl. median), proportions, different types of correlation measures, difference in means, quantiles and medians. Many of the classic confidence intervals are described in Smithson, M. (2003, ISBN: 978-0761924999). Bootstrap confidence intervals are calculated with the R package 'boot'. Both one- and two-sided intervals are supported.", + "License": "GPL (>= 2)", + "Depends": [ + "R (>= 3.1.0)" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "Imports": [ + "boot", + "stats" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "URL": "https://github.com/mayer79/confintr", + "BugReports": "https://github.com/mayer79/confintr/issues", + "NeedsCompilation": "no", + "Author": "Michael Mayer [aut, cre]", + "Maintainer": "Michael Mayer ", + "Repository": "CRAN" + }, "conflicted": { "Package": "conflicted", "Version": "1.2.0", @@ -1426,41 +1103,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "coro": { - "Package": "coro", - "Version": "1.1.0", - "Source": "Repository", - "Title": "'Coroutines' for R", - "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides 'coroutines' for R, a family of functions that can be suspended and resumed later on. This includes 'async' functions (which await) and generators (which yield). 'Async' functions are based on the concurrency framework of the 'promises' package. Generators are based on a dependency free iteration protocol defined in 'coro' and are compatible with iterators from the 'reticulate' package.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/coro, https://coro.r-lib.org/", - "BugReports": "https://github.com/r-lib/coro/issues", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "rlang (>= 0.4.12)" - ], - "Suggests": [ - "knitr", - "later (>= 1.1.0)", - "magrittr (>= 2.0.0)", - "promises", - "reticulate", - "rmarkdown", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Lionel Henry ", - "Repository": "CRAN" - }, "cpp11": { "Package": "cpp11", "Version": "0.5.2", @@ -1540,13 +1182,15 @@ }, "crosstalk": { "Package": "crosstalk", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Type": "Package", "Title": "Inter-Widget Interactivity for HTML Widgets", - "Authors@R": "c( person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(family = \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(, \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). Currently supports linked brushing and filtering.", "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk", + "BugReports": "https://github.com/rstudio/crosstalk/issues", "Imports": [ "htmltools (>= 0.3.6)", "jsonlite", @@ -1554,62 +1198,23 @@ "R6" ], "Suggests": [ - "shiny", + "bslib", "ggplot2", - "testthat (>= 2.1.0)", "sass", - "bslib" + "shiny", + "testthat (>= 2.1.0)" ], - "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk", - "BugReports": "https://github.com/rstudio/crosstalk/issues", - "RoxygenNote": "7.2.3", + "Config/Needs/website": "jcheng5/d3scatter, DT, leaflet, rmarkdown", "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)", - "Maintainer": "Carson Sievert ", - "Repository": "CRAN" - }, - "crul": { - "Package": "crul", - "Version": "1.5.0", - "Source": "Repository", - "Title": "HTTP Client", - "Description": "A simple HTTP client, with tools for making HTTP requests, and mocking HTTP requests. The package is built on R6, and takes inspiration from Ruby's 'faraday' gem (). The package name is a play on curl, the widely used command line tool for HTTP, and this package is built on top of the R package 'curl', an interface to 'libcurl' ().", - "License": "MIT + file LICENSE", - "Authors@R": "c( person(\"Scott\", \"Chamberlain\", role = c(\"aut\", \"cre\"), email = \"myrmecocystus@gmail.com\", comment = c(ORCID = \"0000-0003-1444-9135\")) )", - "URL": "https://docs.ropensci.org/crul/, https://github.com/ropensci/crul, https://books.ropensci.org/http-testing/", - "BugReports": "https://github.com/ropensci/crul/issues", - "Encoding": "UTF-8", - "Language": "en-US", - "Imports": [ - "curl (>= 3.3)", - "R6 (>= 2.2.0)", - "urltools (>= 1.6.0)", - "httpcode (>= 0.2.0)", - "jsonlite", - "mime" - ], - "Suggests": [ - "testthat", - "roxygen2 (>= 7.1.1)", - "fauxpas (>= 0.1.0)", - "webmockr (>= 0.1.0)", - "knitr", - "rmarkdown" - ], - "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", - "X-schema.org-applicationCategory": "Web", - "X-schema.org-keywords": "http, https, API, web-services, curl, download, libcurl, async, mocking, caching", - "X-schema.org-isPartOf": "https://ropensci.org", "NeedsCompilation": "no", - "Author": "Scott Chamberlain [aut, cre] ()", - "Maintainer": "Scott Chamberlain ", + "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)", + "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, "curl": { "Package": "curl", - "Version": "6.4.0", + "Version": "7.0.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", @@ -1633,7 +1238,7 @@ "Depends": [ "R (>= 3.0.0)" ], - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "yes", @@ -1736,88 +1341,15 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "diagram": { - "Package": "diagram", - "Version": "1.6.5", - "Source": "Repository", - "Title": "Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams", - "Author": "Karline Soetaert ", - "Maintainer": "Karline Soetaert ", - "Depends": [ - "R (>= 2.01)", - "shape" - ], - "Imports": [ - "stats", - "graphics" - ], - "Description": "Visualises simple graphs (networks) based on a transition matrix, utilities to plot flow diagrams, visualising webs, electrical networks, etc. Support for the book \"A practical guide to ecological modelling - using R as a simulation platform\" by Karline Soetaert and Peter M.J. Herman (2009), Springer. and the book \"Solving Differential Equations in R\" by Karline Soetaert, Jeff Cash and Francesca Mazzia (2012), Springer. Includes demo(flowchart), demo(plotmat), demo(plotweb).", - "License": "GPL (>= 2)", - "LazyData": "yes", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "dials": { - "Package": "dials", - "Version": "1.4.0", - "Source": "Repository", - "Title": "Tools for Creating Tuning Parameter Values", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Hannah\", \"Frick\", , \"hannah@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Many models contain tuning parameters (i.e. parameters that cannot be directly estimated from the data). These tools can be used to define objects for creating, simulating, or validating values for such parameters.", - "License": "MIT + file LICENSE", - "URL": "https://dials.tidymodels.org, https://github.com/tidymodels/dials", - "BugReports": "https://github.com/tidymodels/dials/issues", - "Depends": [ - "R (>= 3.4)", - "scales (>= 1.3.0)" - ], - "Imports": [ - "cli", - "DiceDesign", - "dplyr (>= 0.8.5)", - "glue", - "hardhat (>= 1.1.0)", - "lifecycle", - "pillar", - "purrr", - "rlang (>= 1.1.0)", - "sfd", - "tibble", - "utils", - "vctrs (>= 0.3.8)", - "withr" - ], - "Suggests": [ - "covr", - "ggplot2", - "kernlab", - "knitr", - "rmarkdown", - "rpart", - "testthat (>= 3.1.9)", - "xml2" - ], - "VignetteBuilder": "knitr", - "ByteCompile": "true", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut], Hannah Frick [aut, cre], Posit Software, PBC [cph, fnd] (03wc8by49)", - "Maintainer": "Hannah Frick ", - "Repository": "RSPM" - }, "digest": { "Package": "digest", - "Version": "0.6.37", + "Version": "0.6.39", "Source": "Repository", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))", - "Date": "2024-08-19", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Date": "2025-11-19", "Title": "Create Compact Hash Digests of R Objects", - "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", - "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html", "BugReports": "https://github.com/eddelbuettel/digest/issues", "Depends": [ "R (>= 3.3.0)" @@ -1828,51 +1360,16 @@ "License": "GPL (>= 2)", "Suggests": [ "tinytest", - "simplermarkdown" + "simplermarkdown", + "rbenchmark" ], "VignetteBuilder": "simplermarkdown", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (), Simon Urbanek [ctb] (), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (), Qiang Kou [ctb] (), Thierry Onkelinx [ctb] (), Michel Lang [ctb] (), Viliam Simko [ctb], Kurt Hornik [ctb] (), Radford Neal [ctb] (), Kendon Bell [ctb] (), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (), Floris Vanderhaeghe [ctb] (), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (), Mark van der Loo [ctb] (), Chris Muir [ctb] (), Moritz Beller [ctb] (), Sebastian Campbell [ctb], Winston Chang [ctb] (), Dean Attali [ctb] (), Michael Chirico [ctb] (), Kevin Ushey [ctb]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, - "doFuture": { - "Package": "doFuture", - "Version": "1.1.2", - "Source": "Repository", - "Title": "Use Foreach to Parallelize via the Future Framework", - "Depends": [ - "foreach (>= 1.5.0)", - "future (>= 1.49.0)" - ], - "Imports": [ - "future.apply", - "globals", - "iterators", - "parallel", - "utils" - ], - "Suggests": [ - "doRNG (>= 1.8.2)", - "markdown", - "R.rsp" - ], - "VignetteBuilder": "R.rsp", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))", - "Description": "The 'future' package provides a unifying parallelization framework for R that supports many parallel and distributed backends . The 'foreach' package provides a powerful API for iterating over an R expression in parallel. The 'doFuture' package brings the best of the two together. There are two alternative ways to use this package. The recommended approach is to use 'y <- foreach(...) %dofuture% { ... }', which does not require using 'registerDoFuture()' and has many advantages over '%dopar%'. The alternative is the traditional 'foreach' approach by registering the 'foreach' adapter 'registerDoFuture()' and so that 'y <- foreach(...) %dopar% { ... }' runs in parallelizes with the 'future' framework.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://doFuture.futureverse.org, https://github.com/futureverse/doFuture", - "BugReports": "https://github.com/futureverse/doFuture/issues", - "Language": "en-US", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: )", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM" - }, "dplyr": { "Package": "dplyr", "Version": "1.1.4", @@ -1979,100 +1476,9 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "e1071": { - "Package": "e1071", - "Version": "1.7-16", - "Source": "Repository", - "Title": "Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien", - "Imports": [ - "graphics", - "grDevices", - "class", - "stats", - "methods", - "utils", - "proxy" - ], - "Suggests": [ - "cluster", - "mlbench", - "nnet", - "randomForest", - "rpart", - "SparseM", - "xtable", - "Matrix", - "MASS", - "slam" - ], - "Authors@R": "c(person(given = \"David\", family = \"Meyer\", role = c(\"aut\", \"cre\"), email = \"David.Meyer@R-project.org\", comment = c(ORCID = \"0000-0002-5196-3048\")), person(given = \"Evgenia\", family = \"Dimitriadou\", role = c(\"aut\",\"cph\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = \"Andreas\", family = \"Weingessel\", role = \"aut\"), person(given = \"Friedrich\", family = \"Leisch\", role = \"aut\"), person(given = \"Chih-Chung\", family = \"Chang\", role = c(\"ctb\",\"cph\"), comment = \"libsvm C++-code\"), person(given = \"Chih-Chen\", family = \"Lin\", role = c(\"ctb\",\"cph\"), comment = \"libsvm C++-code\"))", - "Description": "Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, generalized k-nearest neighbour ...", - "License": "GPL-2 | GPL-3", - "LazyLoad": "yes", - "NeedsCompilation": "yes", - "Author": "David Meyer [aut, cre] (), Evgenia Dimitriadou [aut, cph], Kurt Hornik [aut] (), Andreas Weingessel [aut], Friedrich Leisch [aut], Chih-Chung Chang [ctb, cph] (libsvm C++-code), Chih-Chen Lin [ctb, cph] (libsvm C++-code)", - "Maintainer": "David Meyer ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "ellmer": { - "Package": "ellmer", - "Version": "0.2.1", - "Source": "Repository", - "Title": "Chat with Large Language Models", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Joe\", \"Cheng\", role = \"aut\"), person(\"Aaron\", \"Jacobs\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Chat with large language models from a range of providers including 'Claude' , 'OpenAI' , and more. Supports streaming, asynchronous calls, tool calling, and structured data extraction.", - "License": "MIT + file LICENSE", - "URL": "https://ellmer.tidyverse.org, https://github.com/tidyverse/ellmer", - "BugReports": "https://github.com/tidyverse/ellmer/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "cli", - "coro (>= 1.1.0)", - "glue", - "httr2 (>= 1.1.1)", - "jsonlite", - "later (>= 1.4.0)", - "lifecycle", - "promises (>= 1.3.1)", - "R6", - "rlang (>= 1.1.0)", - "S7 (>= 0.2.0)" - ], - "Suggests": [ - "base64enc", - "connectcreds", - "curl (>= 6.0.1)", - "gargle", - "gitcreds", - "knitr", - "magick", - "openssl", - "paws.common", - "rmarkdown", - "shiny", - "shinychat (>= 0.2.0)", - "testthat (>= 3.0.0)", - "withr" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate, rmarkdown", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "test-provider-*", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Collate": "'utils-S7.R' 'types.R' 'tools-def.R' 'content.R' 'provider.R' 'as-json.R' 'batch-chat.R' 'chat-parallel.R' 'chat-structured.R' 'utils-coro.R' 'chat.R' 'content-image.R' 'content-pdf.R' 'turns.R' 'content-tools.R' 'deprecated.R' 'ellmer-package.R' 'httr2.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'interpolate.R' 'params.R' 'provider-openai.R' 'provider-azure.R' 'provider-bedrock.R' 'provider-claude.R' 'provider-gemini.R' 'provider-cloudflare.R' 'provider-cortex.R' 'provider-databricks.R' 'provider-deepseek.R' 'provider-gemini-upload.R' 'provider-github.R' 'provider-groq.R' 'provider-huggingface.r' 'provider-mistral.R' 'provider-ollama.R' 'provider-openrouter.R' 'provider-perplexity.R' 'provider-portkey.R' 'provider-snowflake.R' 'provider-vllm.R' 'shiny.R' 'tokens.R' 'tools-def-auto.R' 'utils-callbacks.R' 'utils-cat.R' 'utils-merge.R' 'utils-prettytime.R' 'utils.R' 'zzz.R'", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre] (ORCID: ), Joe Cheng [aut], Aaron Jacobs [aut], Garrick Aden-Buie [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, "evaluate": { "Package": "evaluate", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Type": "Package", "Title": "Parsing and Evaluation Tools that Provide More Details than the Default", @@ -2149,24 +1555,6 @@ "Maintainer": "Winston Chang ", "Repository": "CRAN" }, - "fastmatch": { - "Package": "fastmatch", - "Version": "1.1-6", - "Source": "Repository", - "Title": "Fast 'match()' Function", - "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, )", - "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))", - "Maintainer": "Simon Urbanek ", - "Description": "Package providing a fast match() replacement for cases that require repeated look-ups. It is slightly faster that R's built-in match() function on first match against a table, but extremely fast on any subsequent lookup as it keeps the hash table in memory.", - "License": "GPL-2", - "Depends": [ - "R (>= 2.3.0)" - ], - "URL": "http://www.rforge.net/fastmatch", - "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "fontawesome": { "Package": "fontawesome", "Version": "0.5.3", @@ -2244,71 +1632,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "foreach": { - "Package": "foreach", - "Version": "1.5.2", - "Source": "Repository", - "Type": "Package", - "Title": "Provides Foreach Looping Construct", - "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Hong\", \"Ooi\", role=\"ctb\"), person(\"Rich\", \"Calaway\", role=\"ctb\"), person(\"Microsoft\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))", - "Description": "Support for the foreach looping construct. Foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter. This package in particular is intended to be used for its return value, rather than for its side effects. In that sense, it is similar to the standard lapply function, but doesn't require the evaluation of a function. Using foreach without side effects also facilitates executing the loop in parallel.", - "License": "Apache License (== 2.0)", - "URL": "https://github.com/RevolutionAnalytics/foreach", - "BugReports": "https://github.com/RevolutionAnalytics/foreach/issues", - "Depends": [ - "R (>= 2.5.0)" - ], - "Imports": [ - "codetools", - "utils", - "iterators" - ], - "Suggests": [ - "randomForest", - "doMC", - "doParallel", - "testthat", - "knitr", - "rmarkdown" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "7.1.1", - "Collate": "'callCombine.R' 'foreach.R' 'do.R' 'foreach-ext.R' 'foreach-pkg.R' 'getDoPar.R' 'getDoSeq.R' 'getsyms.R' 'iter.R' 'nextElem.R' 'onLoad.R' 'setDoPar.R' 'setDoSeq.R' 'times.R' 'utils.R'", - "NeedsCompilation": "no", - "Author": "Folashade Daniel [cre], Hong Ooi [ctb], Rich Calaway [ctb], Microsoft [aut, cph], Steve Weston [aut]", - "Maintainer": "Folashade Daniel ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "formatR": { - "Package": "formatR", - "Version": "1.14", - "Source": "Repository", - "Type": "Package", - "Title": "Format R Code Automatically", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Ed\", \"Lee\", role = \"ctb\"), person(\"Eugene\", \"Ha\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person() )", - "Description": "Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).", - "Depends": [ - "R (>= 3.2.3)" - ], - "Suggests": [ - "rstudioapi", - "shiny", - "testit", - "rmarkdown", - "knitr" - ], - "License": "GPL", - "URL": "https://github.com/yihui/formatR", - "BugReports": "https://github.com/yihui/formatR/issues", - "VignetteBuilder": "knitr", - "RoxygenNote": "7.2.3", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Ed Lee [ctb], Eugene Ha [ctb], Kohske Takahashi [ctb], Pavel Krivitsky [ctb]", - "Maintainer": "Yihui Xie ", - "Repository": "CRAN" - }, "fs": { "Package": "fs", "Version": "1.6.6", @@ -2393,59 +1716,9 @@ "Maintainer": "Davis Vaughan ", "Repository": "RSPM" }, - "futile.logger": { - "Package": "futile.logger", - "Version": "1.4.3", - "Source": "Repository", - "Type": "Package", - "Title": "A Logging Utility for R", - "Date": "2016-07-10", - "Author": "Brian Lee Yung Rowe", - "Maintainer": "Brian Lee Yung Rowe ", - "Depends": [ - "R (>= 3.0.0)" - ], - "Imports": [ - "utils", - "lambda.r (>= 1.1.0)", - "futile.options" - ], - "Suggests": [ - "testthat", - "jsonlite" - ], - "Description": "Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.", - "License": "LGPL-3", - "LazyLoad": "yes", - "NeedsCompilation": "no", - "ByteCompile": "yes", - "Collate": "'options.R' 'appender.R' 'constants.R' 'layout.R' 'logger.R' 'scat.R' 'futile.logger-package.R'", - "RoxygenNote": "5.0.1", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "futile.options": { - "Package": "futile.options", - "Version": "1.0.1", - "Source": "Repository", - "Type": "Package", - "Title": "Futile Options Management", - "Date": "2018-04-20", - "Author": "Brian Lee Yung Rowe", - "Maintainer": "Brian Lee Yung Rowe ", - "Depends": [ - "R (>= 2.8.0)" - ], - "Description": "A scoped options management framework. Used in other packages.", - "License": "LGPL-3", - "LazyLoad": "yes", - "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "future": { "Package": "future", - "Version": "1.58.0", + "Version": "1.67.0", "Source": "Repository", "Title": "Unified Parallel and Distributed Processing in R for Everyone", "Depends": [ @@ -2476,77 +1749,10 @@ "Language": "en-US", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", + "Collate": "'000.bquote.R' '000.import.R' '000.re-exports.R' '010.tweakable.R' '010.utils-parallelly.R' 'backend_api-01-FutureBackend-class.R' 'backend_api-03.MultiprocessFutureBackend-class.R' 'backend_api-11.ClusterFutureBackend-class.R' 'backend_api-11.MulticoreFutureBackend-class.R' 'backend_api-11.SequentialFutureBackend-class.R' 'backend_api-13.MultisessionFutureBackend-class.R' 'backend_api-ConstantFuture-class.R' 'backend_api-Future-class.R' 'backend_api-FutureRegistry.R' 'backend_api-UniprocessFuture-class.R' 'backend_api-evalFuture.R' 'core_api-cancel.R' 'core_api-future.R' 'core_api-reset.R' 'core_api-resolved.R' 'core_api-value.R' 'delayed_api-futureAssign.R' 'delayed_api-futureOf.R' 'demo_api-mandelbrot.R' 'infix_api-01-futureAssign_OP.R' 'infix_api-02-globals_OP.R' 'infix_api-03-seed_OP.R' 'infix_api-04-stdout_OP.R' 'infix_api-05-conditions_OP.R' 'infix_api-06-lazy_OP.R' 'infix_api-07-label_OP.R' 'infix_api-08-plan_OP.R' 'infix_api-09-tweak_OP.R' 'protected_api-FutureCondition-class.R' 'protected_api-FutureGlobals-class.R' 'protected_api-FutureResult-class.R' 'protected_api-futures.R' 'protected_api-globals.R' 'protected_api-journal.R' 'protected_api-resolve.R' 'protected_api-signalConditions.R' 'testme.R' 'utils-basic.R' 'utils-conditions.R' 'utils-connections.R' 'utils-debug.R' 'utils-immediateCondition.R' 'utils-marshalling.R' 'utils-objectSize.R' 'utils-options.R' 'utils-prune_pkg_code.R' 'utils-registerClusterTypes.R' 'utils-rng_utils.R' 'utils-signalEarly.R' 'utils-stealth_sample.R' 'utils-sticky_globals.R' 'utils-tweakExpression.R' 'utils-uuid.R' 'utils-whichIndex.R' 'utils_api-backtrace.R' 'utils_api-capture_journals.R' 'utils_api-futureCall.R' 'utils_api-futureSessionInfo.R' 'utils_api-makeClusterFuture.R' 'utils_api-minifuture.R' 'utils_api-nbrOfWorkers.R' 'utils_api-plan.R' 'utils_api-plan-with.R' 'utils_api-sessionDetails.R' 'utils_api-tweak.R' 'zzz.R'", "NeedsCompilation": "no", "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: )", "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM" - }, - "future.apply": { - "Package": "future.apply", - "Version": "1.20.0", - "Source": "Repository", - "Title": "Apply Function to Elements in Parallel using Futures", - "Depends": [ - "R (>= 3.2.0)", - "future (>= 1.49.0)" - ], - "Imports": [ - "globals", - "parallel", - "utils" - ], - "Suggests": [ - "datasets", - "stats", - "tools", - "listenv", - "R.rsp", - "markdown" - ], - "VignetteBuilder": "R.rsp", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))", - "Description": "Implementations of apply(), by(), eapply(), lapply(), Map(), .mapply(), mapply(), replicate(), sapply(), tapply(), and vapply() that can be resolved using any future-supported backend, e.g. parallel on the local machine or distributed on a compute cluster. These future_*apply() functions come with the same pros and cons as the corresponding base-R *apply() functions but with the additional feature of being able to be processed via the future framework .", - "License": "GPL (>= 2)", - "LazyLoad": "TRUE", - "URL": "https://future.apply.futureverse.org, https://github.com/futureverse/future.apply", - "BugReports": "https://github.com/futureverse/future.apply/issues", - "Language": "en-US", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: ), R Core Team [cph, ctb]", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM" - }, - "future.mirai": { - "Package": "future.mirai", - "Version": "0.10.1", - "Source": "Repository", - "Depends": [ - "future (>= 1.49.0)" - ], - "Imports": [ - "mirai (>= 2.2.0)", - "parallelly", - "utils" - ], - "Suggests": [ - "future.tests", - "future.apply", - "listenv" - ], - "Title": "A 'Future' API for Parallel Processing using 'mirai'", - "Description": "Implementation of the 'Future' API on top of the 'mirai' package . By using this package, you get to take advantage of the benefits of 'mirai' plus everything else that 'future' and the 'Futureverse' adds on top of it. It allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local machine or across remote machines. Contrary to back-ends relying on the 'parallel' package (e.g. 'multisession') and socket connections, 'mirai_cluster' and 'mirai_multisession', provided here, can run more than 125 parallel R processes. As a reminder, regardless which future backend is used by the user, the code does not have to change, it gives identical results, and behaves exactly the same.", - "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\") ), person(\"Charlie\", \"Gao\", role = c(\"ctb\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\", note = \"For 'mirai'-related patches and implementing feature requests in 'mirai'\") ))", - "License": "GPL (>= 3)", - "Language": "en-US", - "Encoding": "UTF-8", - "URL": "https://future.mirai.futureverse.org, https://github.com/futureverse/future.mirai", - "BugReports": "https://github.com/futureverse/future.mirai/issues", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: ), Charlie Gao [ctb] (ORCID: , note: For 'mirai'-related patches and implementing feature requests in 'mirai')", - "Maintainer": "Henrik Bengtsson ", "Repository": "CRAN" }, "gargle": { @@ -2699,6 +1905,125 @@ "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, + "ggpmisc": { + "Package": "ggpmisc", + "Version": "0.6.3", + "Source": "Repository", + "Type": "Package", + "Title": "Miscellaneous Extensions to 'ggplot2'", + "Date": "2025-11-29", + "Authors@R": "c( person(\"Pedro J.\", \"Aphalo\", email = \"pedro.aphalo@helsinki.fi\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Kamil\", \"Slowikowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Samer\", \"Mouksassi\", email = \"samermouksassi@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-7152-6654\")) )", + "Maintainer": "Pedro J. Aphalo ", + "Description": "Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Statistics: locate and tag peaks and valleys; label plot with the equation of a fitted polynomial or other types of models including major axis, quantile and robust and resistant regression. Labels for P-value, R^2 or adjusted R^2 or information criteria for fitted models; parametric and non-parametric correlation; label with ANOVA table for fitted models; label with summary table for fitted models; annotations for multiple comparisons with adjusted P-values. Model fit classes for which suitable methods are provided by package 'broom' and 'broom.mixed' are supported as well as user-defined wrappers on model fit functions. Scales and stats to build volcano and quadrant plots based on outcomes, fold changes, p-values and false discovery rates.", + "License": "GPL (>= 2)", + "LazyLoad": "TRUE", + "ByteCompile": "TRUE", + "Depends": [ + "R (>= 4.0.0)", + "ggpp (>= 0.5.8)" + ], + "Imports": [ + "grid", + "stats", + "ggplot2 (>= 3.5.0)", + "scales (>= 1.3.0)", + "rlang (>= 1.1.3)", + "generics (>= 0.1.3)", + "MASS (>= 7.3-60)", + "confintr (>= 1.0.2)", + "polynom (>= 1.4-1)", + "quantreg (>= 6.0)", + "lmodel2 (>= 1.7-4)", + "nlme (>= 3.1-160)", + "splus2R (>= 1.3-5)", + "multcomp (>= 1.4-25)", + "multcompView (>= 0.1-10)", + "mixtools (>= 2.0.0)", + "tibble (>= 3.2.1)", + "plyr (>= 1.8.9)", + "dplyr (>= 1.1.4)", + "tidyr (>= 1.3.0)", + "lubridate (>= 1.9.3)", + "caTools (>= 1.18.3)" + ], + "Suggests": [ + "knitr (>= 1.45)", + "rmarkdown (>= 2.25)", + "ggrepel (>= 0.9.5)", + "broom (>= 1.0.3)", + "broom.mixed (>= 0.2.9.5)", + "robustbase (>= 0.99-4-1)", + "gginnards (>= 0.2.0)", + "ggtext (>= 0.1.2)", + "testthat", + "vdiffr" + ], + "URL": "https://docs.r4photobiology.info/ggpmisc/, https://github.com/aphalo/ggpmisc", + "BugReports": "https://github.com/aphalo/ggpmisc/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", + "Config/Needs/website": "rmarkdown", + "NeedsCompilation": "no", + "Author": "Pedro J. Aphalo [aut, cre] (ORCID: ), Kamil Slowikowski [ctb] (ORCID: ), Samer Mouksassi [ctb] (ORCID: )", + "Repository": "CRAN" + }, + "ggpp": { + "Package": "ggpp", + "Version": "0.5.9", + "Source": "Repository", + "Type": "Package", + "Title": "Grammar Extensions to 'ggplot2'", + "Date": "2025-06-27", + "Authors@R": "c( person(\"Pedro J.\", \"Aphalo\", email = \"pedro.aphalo@helsinki.fi\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Kamil\", \"Slowikowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Daniel\", \"Sabanés Bové\", role = \"ctb\"), person(\"Stella\", \"Banjo\", role = \"ctb\") )", + "Maintainer": "Pedro J. Aphalo ", + "Description": "Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to plots using native data coordinates, while geom_table_npc(), geom_plot_npc() and geom_grob_npc() do the same using \"npc\" coordinates through new aesthetics \"npcx\" and \"npcy\". Statistics: select observations based on 2D density. Positions: radial nudging away from a center point and nudging away from a line or curve; combined stacking and nudging; combined dodging and nudging.", + "License": "GPL (>= 2)", + "LazyData": "TRUE", + "LazyLoad": "TRUE", + "ByteCompile": "TRUE", + "Depends": [ + "R (>= 4.1.0)", + "ggplot2 (>= 3.5.0)" + ], + "Imports": [ + "stats", + "grid", + "grDevices", + "rlang (>= 1.0.6)", + "vctrs (>= 0.6.0)", + "magrittr (>= 2.0.1)", + "glue (>= 1.6.0)", + "gridExtra (>= 2.3)", + "scales (>= 1.2.0)", + "tibble (>= 3.1.8)", + "dplyr (>= 1.1.0)", + "xts (>= 0.13.0)", + "zoo (>= 1.8-11)", + "MASS (>= 7.3-58)", + "polynom (>= 1.4-0)", + "lubridate (>= 1.9.0)", + "stringr (>= 1.4.0)" + ], + "Suggests": [ + "knitr (>= 1.40)", + "rmarkdown (>= 2.20)", + "ggrepel (>= 0.9.2)", + "gginnards(>= 0.1.1)", + "magick (>= 2.7.3)", + "testthat (>= 3.1.5)", + "vdiffr (>= 1.0.5)" + ], + "URL": "https://docs.r4photobiology.info/ggpp/, https://github.com/aphalo/ggpp", + "BugReports": "https://github.com/aphalo/ggpp/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "VignetteBuilder": "knitr", + "Collate": "'annotate.r' 'compute-npc.r' 'dark-or-light.R' 'example-data.R' 'geom-grob.R' 'ggpp-legend-draw.R' 'utilities.R' 'ggp2-margins.R' 'geom-label-linked.r' 'geom-label-npc.r' 'geom-label-pairwise.r' 'geom-margin-arrow.r' 'geom-margin-grob.r' 'geom-margin-point.r' 'geom-plot.R' 'geom-point-linked.r' 'geom-quadrant-lines.R' 'geom-table.R' 'geom-text-linked.r' 'geom-text-npc.r' 'geom-text-pairwise.R' 'ggpp.R' 'position-dodge-nudge-to.R' 'position-dodge-nudge.R' 'position-dodge2-nudge.R' 'position-dodge2nudge-to.R' 'position-jitter-nudge.R' 'position-nudge-center.R' 'position-nudge-line.R' 'position-stack-nudge.R' 'position-stacknudge-to.R' 'scale-continuous-npc.r' 'stat-apply.R' 'stat-dens1d-filter.r' 'stat-dens1d-labels.r' 'stat-dens2d-filter.r' 'stat-dens2d-labels.r' 'stat-format-table.R' 'stat-functions.R' 'stat-panel-counts.R' 'stat-quadrant-counts.R' 'try-data-frame.R' 'weather-data.R' 'wrap-labels.R'", + "NeedsCompilation": "no", + "Author": "Pedro J. Aphalo [aut, cre] (ORCID: ), Kamil Slowikowski [ctb] (ORCID: ), Michał Krassowski [ctb] (ORCID: ), Daniel Sabanés Bové [ctb], Stella Banjo [ctb]", + "Repository": "CRAN" + }, "ggthemr": { "Package": "ggthemr", "Version": "1.1.0", @@ -2731,75 +2056,6 @@ "Author": "Ciaran Tobin [aut], Amy Tzu-Yu Chen [cre] (ORCID: ), Gergely Daróczi [ctb] (ORCID: ), Mikata [fnd]", "Maintainer": "Amy Tzu-Yu Chen " }, - "glmnet": { - "Package": "glmnet", - "Version": "4.1-10", - "Source": "Repository", - "Type": "Package", - "Title": "Lasso and Elastic-Net Regularized Generalized Linear Models", - "Date": "2025-07-15", - "Authors@R": "c(person(\"Jerome\", \"Friedman\", role=c(\"aut\")), person(\"Trevor\", \"Hastie\", role=c(\"aut\", \"cre\"), email = \"hastie@stanford.edu\"), person(\"Rob\", \"Tibshirani\", role=c(\"aut\")), person(\"Balasubramanian\", \"Narasimhan\", role=c(\"aut\")), person(\"Kenneth\",\"Tay\",role=c(\"aut\")), person(\"Noah\", \"Simon\", role=c(\"aut\")), person(\"Junyang\", \"Qian\", role=c(\"ctb\")), person(\"James\", \"Yang\", role=c(\"aut\")))", - "Depends": [ - "R (>= 3.6.0)", - "Matrix (>= 1.0-6)" - ], - "Imports": [ - "methods", - "utils", - "foreach", - "shape", - "survival", - "Rcpp" - ], - "Suggests": [ - "knitr", - "lars", - "testthat", - "xfun", - "rmarkdown" - ], - "SystemRequirements": "C++17", - "Description": "Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model, multiple-response Gaussian, and the grouped multinomial regression; see and . There are two new and important additions. The family argument can be a GLM family object, which opens the door to any programmed family (). This comes with a modest computational cost, so when the built-in families suffice, they should be used instead. The other novelty is the relax option, which refits each of the active sets in the path unpenalized. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the papers cited.", - "License": "GPL-2", - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "URL": "https://glmnet.stanford.edu", - "RoxygenNote": "7.3.2", - "LinkingTo": [ - "RcppEigen", - "Rcpp" - ], - "NeedsCompilation": "yes", - "Author": "Jerome Friedman [aut], Trevor Hastie [aut, cre], Rob Tibshirani [aut], Balasubramanian Narasimhan [aut], Kenneth Tay [aut], Noah Simon [aut], Junyang Qian [ctb], James Yang [aut]", - "Maintainer": "Trevor Hastie ", - "Repository": "CRAN" - }, - "globals": { - "Package": "globals", - "Version": "0.18.0", - "Source": "Repository", - "Depends": [ - "R (>= 3.1.2)" - ], - "Imports": [ - "codetools" - ], - "Title": "Identify Global Objects in R Expressions", - "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@posit.co\"))", - "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, conservative, or deep-first search). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "ByteCompile": "TRUE", - "Language": "en-US", - "Encoding": "UTF-8", - "URL": "https://globals.futureverse.org, https://github.com/futureverse/globals", - "BugReports": "https://github.com/futureverse/globals/issues", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM" - }, "glue": { "Package": "glue", "Version": "1.8.0", @@ -2941,28 +2197,6 @@ "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, - "gower": { - "Package": "gower", - "Version": "1.0.2", - "Source": "Repository", - "Maintainer": "Mark van der Loo ", - "License": "GPL-3", - "Title": "Gower's Distance", - "Type": "Package", - "LazyLoad": "yes", - "Authors@R": "c( person(\"Mark\", \"van der Loo\", role=c(\"aut\",\"cre\"),email=\"mark.vanderloo@gmail.com\") , person(\"David\", \"Turner\", role=\"ctb\"))", - "Description": "Compute Gower's distance (or similarity) coefficient between records. Compute the top-n matches between records. Core algorithms are executed in parallel on systems supporting OpenMP.", - "URL": "https://github.com/markvanderloo/gower", - "BugReports": "https://github.com/markvanderloo/gower/issues", - "Suggests": [ - "tinytest (>= 0.9.3)" - ], - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Mark van der Loo [aut, cre], David Turner [ctb]", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, "gridExtra": { "Package": "gridExtra", "Version": "2.3", @@ -2994,6 +2228,76 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, + "gt": { + "Package": "gt", + "Version": "1.1.0", + "Source": "Repository", + "Type": "Package", + "Title": "Easily Create Presentation-Ready Display Tables", + "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Ellis\", \"Hughes\", , \"ellis.h.hughes@gsk.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0637-4436\")), person(\"Alexandra\", \"Lauer\", , \"alexandralauer1@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4191-6301\")), person(\"JooYoung\", \"Seo\", , \"jseo1005@illinois.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Ken\", \"Brevoort\", , \"ken@brevoort.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4001-8358\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.", + "License": "MIT + file LICENSE", + "URL": "https://gt.rstudio.com, https://github.com/rstudio/gt", + "BugReports": "https://github.com/rstudio/gt/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "base64enc (>= 0.1-3)", + "bigD (>= 0.2)", + "bitops (>= 1.0-7)", + "cli (>= 3.6.3)", + "commonmark (>= 1.9.1)", + "dplyr (>= 1.1.4)", + "fs (>= 1.6.4)", + "glue (>= 1.8.0)", + "htmltools (>= 0.5.8.1)", + "htmlwidgets (>= 1.6.4)", + "juicyjuice (>= 0.1.0)", + "magrittr (>= 2.0.3)", + "markdown (>= 1.13)", + "reactable (>= 0.4.4)", + "rlang (>= 1.1.4)", + "sass (>= 0.4.9)", + "scales (>= 1.3.0)", + "tidyselect (>= 1.2.1)", + "vctrs", + "xml2 (>= 1.3.6)" + ], + "Suggests": [ + "farver", + "fontawesome (>= 0.5.2)", + "ggplot2", + "grid", + "gtable (>= 0.3.6)", + "katex (>= 1.4.1)", + "knitr", + "lubridate", + "magick", + "paletteer", + "RColorBrewer", + "rmarkdown (>= 2.20)", + "rsvg", + "rvest", + "shiny (>= 1.9.1)", + "testthat (>= 3.1.9)", + "tidyr (>= 1.0.0)", + "webshot2 (>= 0.1.0)", + "withr" + ], + "Config/Needs/coverage": "officer", + "Config/Needs/website": "quarto", + "ByteCompile": "true", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Richard Iannone [aut, cre] (ORCID: ), Joe Cheng [aut], Barret Schloerke [aut] (ORCID: ), Ellis Hughes [aut] (ORCID: ), Alexandra Lauer [aut] (ORCID: ), JooYoung Seo [aut] (ORCID: ), Ken Brevoort [aut] (ORCID: ), Olivier Roy [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Richard Iannone ", + "Repository": "CRAN" + }, "gtable": { "Package": "gtable", "Version": "0.3.6", @@ -3034,52 +2338,6 @@ "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, - "hardhat": { - "Package": "hardhat", - "Version": "1.4.1", - "Source": "Repository", - "Title": "Construct Modeling Packages", - "Authors@R": "c( person(\"Hannah\", \"Frick\", , \"hannah@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6049-5258\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Building modeling packages is hard. A large amount of effort generally goes into providing an implementation for a new method that is efficient, fast, and correct, but often less emphasis is put on the user interface. A good interface requires specialized knowledge about S3 methods and formulas, which the average package developer might not have. The goal of 'hardhat' is to reduce the burden around building new modeling packages by providing functionality for preprocessing, predicting, and validating input.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/hardhat, https://hardhat.tidymodels.org", - "BugReports": "https://github.com/tidymodels/hardhat/issues", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "cli (>= 3.6.0)", - "glue (>= 1.6.2)", - "rlang (>= 1.1.0)", - "sparsevctrs (>= 0.2.0)", - "tibble (>= 3.2.1)", - "vctrs (>= 0.6.0)" - ], - "Suggests": [ - "covr", - "crayon", - "devtools", - "knitr", - "Matrix", - "modeldata (>= 0.0.2)", - "recipes (>= 1.0.5)", - "rmarkdown (>= 2.3)", - "roxygen2", - "testthat (>= 3.0.0)", - "usethis (>= 2.1.5)", - "withr (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hannah Frick [aut, cre] (), Davis Vaughan [aut], Max Kuhn [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Hannah Frick ", - "Repository": "RSPM" - }, "haven": { "Package": "haven", "Version": "2.5.5", @@ -3270,68 +2528,6 @@ "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, - "httpcode": { - "Package": "httpcode", - "Version": "0.3.0", - "Source": "Repository", - "Title": "'HTTP' Status Code Helper", - "Description": "Find and explain the meaning of 'HTTP' status codes. Functions included for searching for codes by full or partial number, by message, and get appropriate dog and cat images for many status codes.", - "Authors@R": "person(\"Scott\", \"Chamberlain\", role = c(\"aut\",\"cre\"), email = \"myrmecocystus@gmail.com\", comment = c(ORCID = \"0000-0003-1444-9135\"))", - "License": "MIT + file LICENSE", - "URL": "https://github.com/sckott/httpcode", - "BugReports": "https://github.com/sckott/httpcode/issues", - "Encoding": "UTF-8", - "Language": "en-US", - "Suggests": [ - "testthat" - ], - "RoxygenNote": "7.1.0", - "NeedsCompilation": "no", - "Author": "Scott Chamberlain [aut, cre] ()", - "Maintainer": "Scott Chamberlain ", - "Repository": "CRAN" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.16", - "Source": "Repository", - "Type": "Package", - "Title": "HTTP and WebSocket Server Library", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", \"fnd\", role = \"cph\"), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", - "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", - "License": "GPL (>= 2) | file LICENSE", - "URL": "https://github.com/rstudio/httpuv", - "BugReports": "https://github.com/rstudio/httpuv/issues", - "Depends": [ - "R (>= 2.15.1)" - ], - "Imports": [ - "later (>= 0.8.0)", - "promises", - "R6", - "Rcpp (>= 1.0.7)", - "utils" - ], - "Suggests": [ - "callr", - "curl", - "jsonlite", - "testthat", - "websocket" - ], - "LinkingTo": [ - "later", - "Rcpp" - ], - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "SystemRequirements": "GNU make, zlib", - "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", - "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", - "Maintainer": "Winston Chang ", - "Repository": "CRAN" - }, "httr": { "Package": "httr", "Version": "1.4.7", @@ -3372,64 +2568,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "httr2": { - "Package": "httr2", - "Version": "1.2.0", - "Source": "Repository", - "Title": "Perform HTTP Requests and Process the Responses", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", - "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.", - "License": "MIT + file LICENSE", - "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2", - "BugReports": "https://github.com/r-lib/httr2/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "cli (>= 3.0.0)", - "curl (>= 6.4.0)", - "glue", - "lifecycle", - "magrittr", - "openssl", - "R6", - "rappdirs", - "rlang (>= 1.1.0)", - "vctrs (>= 0.6.3)", - "withr" - ], - "Suggests": [ - "askpass", - "bench", - "clipr", - "covr", - "docopt", - "httpuv", - "jose", - "jsonlite", - "knitr", - "later (>= 1.4.0)", - "nanonext", - "paws.common", - "promises", - "rmarkdown", - "testthat (>= 3.1.8)", - "tibble", - "webfakes (>= 1.4.0)", - "xml2" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "resp-stream, req-perform", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", - "Maintainer": "Hadley Wickham ", - "Repository": "RSPM" - }, "ids": { "Package": "ids", "Version": "1.0.1", @@ -3458,135 +2596,6 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, - "infer": { - "Package": "infer", - "Version": "1.0.9", - "Source": "Repository", - "Type": "Package", - "Title": "Tidy Statistical Inference", - "Authors@R": "c( person(\"Andrew\", \"Bray\", , \"abray@reed.edu\", role = \"aut\"), person(\"Chester\", \"Ismay\", , \"chester.ismay@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2820-2547\")), person(\"Evgeni\", \"Chasnovski\", , \"evgeni.chasnovski@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1617-4019\")), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5676-5107\")), person(\"Ben\", \"Baumer\", , \"ben.baumer@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3279-0516\")), person(\"Mine\", \"Cetinkaya-Rundel\", , \"mine@stat.duke.edu\", role = \"aut\", comment = c(ORCID = \"0000-0001-6452-2420\")), person(\"Ted\", \"Laderas\", , \"tedladeras@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6207-7068\")), person(\"Nick\", \"Solomon\", , \"nick.solomon@datacamp.com\", role = \"ctb\"), person(\"Johanna\", \"Hardin\", , \"Jo.Hardin@pomona.edu\", role = \"ctb\"), person(\"Albert Y.\", \"Kim\", , \"albert.ys.kim@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7824-306X\")), person(\"Neal\", \"Fultz\", , \"nfultz@gmail.com\", role = \"ctb\"), person(\"Doug\", \"Friedman\", , \"doug.nhp@gmail.com\", role = \"ctb\"), person(\"Richie\", \"Cotton\", , \"richie@datacamp.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2504-802X\")), person(\"Brian\", \"Fannin\", , \"captain@pirategrunt.com\", role = \"ctb\") )", - "Description": "The objective of this package is to perform inference using an expressive statistical grammar that coheres with the tidy design framework.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/infer, https://infer.tidymodels.org/", - "BugReports": "https://github.com/tidymodels/infer/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "broom", - "cli", - "dplyr (>= 0.7.0)", - "generics", - "ggplot2 (>= 3.5.2)", - "glue (>= 1.3.0)", - "grDevices", - "lifecycle", - "magrittr", - "methods", - "patchwork", - "purrr", - "rlang (>= 0.2.0)", - "tibble", - "tidyr", - "vctrs (>= 0.6.5)" - ], - "Suggests": [ - "covr", - "devtools (>= 1.12.0)", - "fs", - "knitr", - "nycflights13", - "parsnip", - "rmarkdown", - "stringr", - "testthat (>= 3.0.0)", - "vdiffr (>= 1.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2025-04-25", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Andrew Bray [aut], Chester Ismay [aut] (ORCID: ), Evgeni Chasnovski [aut] (ORCID: ), Simon Couch [aut, cre] (ORCID: ), Ben Baumer [aut] (ORCID: ), Mine Cetinkaya-Rundel [aut] (ORCID: ), Ted Laderas [ctb] (ORCID: ), Nick Solomon [ctb], Johanna Hardin [ctb], Albert Y. Kim [ctb] (ORCID: ), Neal Fultz [ctb], Doug Friedman [ctb], Richie Cotton [ctb] (ORCID: ), Brian Fannin [ctb]", - "Maintainer": "Simon Couch ", - "Repository": "RSPM" - }, - "inum": { - "Package": "inum", - "Version": "1.0-5", - "Source": "Repository", - "Title": "Interval and Enum-Type Representation of Vectors", - "Date": "2023-03-09", - "Authors@R": "person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\")", - "Description": "Enum-type representation of vectors and representation of intervals, including a method of coercing variables in data frames.", - "Depends": [ - "R (>= 3.3.0)" - ], - "Imports": [ - "stats", - "libcoin (>= 1.0-0)" - ], - "License": "GPL-2", - "NeedsCompilation": "no", - "Author": "Torsten Hothorn [aut, cre]", - "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" - }, - "ipred": { - "Package": "ipred", - "Version": "0.9-15", - "Source": "Repository", - "Title": "Improved Predictors", - "Date": "2024-07-18", - "Authors@R": "c(person(\"Andrea\", \"Peters\", role = \"aut\"), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\"), person(\"Brian D.\", \"Ripley\", role = \"ctb\"), person(\"Terry\", \"Therneau\", role = \"ctb\"), person(\"Beth\", \"Atkinson\", role = \"ctb\"))", - "Description": "Improved predictive models by indirect classification and bagging for classification, regression and survival problems as well as resampling based estimators of prediction error.", - "Depends": [ - "R (>= 2.10)" - ], - "Imports": [ - "rpart (>= 3.1-8)", - "MASS", - "survival", - "nnet", - "class", - "prodlim" - ], - "Suggests": [ - "mvtnorm", - "mlbench", - "TH.data", - "randomForest", - "party" - ], - "License": "GPL (>= 2)", - "NeedsCompilation": "yes", - "Author": "Andrea Peters [aut], Torsten Hothorn [aut, cre], Brian D. Ripley [ctb], Terry Therneau [ctb], Beth Atkinson [ctb]", - "Maintainer": "Torsten Hothorn ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "irr": { - "Package": "irr", - "Version": "0.84.1", - "Source": "Repository", - "Date": "2012-01-22", - "Title": "Various Coefficients of Interrater Reliability and Agreement", - "Author": "Matthias Gamer , Jim Lemon , Ian Fellows Puspendra Singh ", - "Maintainer": "Matthias Gamer ", - "Depends": [ - "R (>= 2.10)", - "lpSolve" - ], - "Description": "Coefficients of Interrater Reliability and Agreement for quantitative, ordinal and nominal data: ICC, Finn-Coefficient, Robinson's A, Kendall's W, Cohen's Kappa, ...", - "License": "GPL (>= 2)", - "URL": "https://www.r-project.org", - "Repository": "CRAN", - "NeedsCompilation": "no", - "Encoding": "UTF-8" - }, "isoband": { "Package": "isoband", "Version": "0.2.7", @@ -3623,102 +2632,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "iterators": { - "Package": "iterators", - "Version": "1.0.14", - "Source": "Repository", - "Type": "Package", - "Title": "Provides Iterator Construct", - "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Revolution\", \"Analytics\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))", - "Description": "Support for iterators, which allow a programmer to traverse through all the elements of a vector, list, or other collection of data.", - "URL": "https://github.com/RevolutionAnalytics/iterators", - "Depends": [ - "R (>= 2.5.0)", - "utils" - ], - "Suggests": [ - "RUnit", - "foreach" - ], - "License": "Apache License (== 2.0)", - "NeedsCompilation": "no", - "Author": "Folashade Daniel [cre], Revolution Analytics [aut, cph], Steve Weston [aut]", - "Maintainer": "Folashade Daniel ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "janeaustenr": { - "Package": "janeaustenr", - "Version": "1.0.0", - "Source": "Repository", - "Title": "Jane Austen's Complete Novels", - "Authors@R": "person(\"Julia\", \"Silge\", , \"julia.silge@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3671-836X\"))", - "Description": "Full texts for Jane Austen's 6 completed novels, ready for text analysis. These novels are \"Sense and Sensibility\", \"Pride and Prejudice\", \"Mansfield Park\", \"Emma\", \"Northanger Abbey\", and \"Persuasion\".", - "License": "MIT + file LICENSE", - "URL": "https://github.com/juliasilge/janeaustenr", - "BugReports": "https://github.com/juliasilge/janeaustenr/issues", - "Depends": [ - "R (>= 3.5)" - ], - "Suggests": [ - "dplyr", - "testthat" - ], - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.2.1", - "NeedsCompilation": "no", - "Author": "Julia Silge [aut, cre] ()", - "Maintainer": "Julia Silge ", - "Repository": "CRAN" - }, - "janitor": { - "Package": "janitor", - "Version": "2.2.1", - "Source": "Repository", - "Title": "Simple Tools for Examining and Cleaning Dirty Data", - "Authors@R": "c(person(\"Sam\", \"Firke\", email = \"samuel.firke@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email = \"wdenney@humanpredictions.com\", role = \"ctb\"), person(\"Chris\", \"Haid\", email = \"chrishaid@gmail.com\", role = \"ctb\"), person(\"Ryan\", \"Knight\", email = \"ryangknight@gmail.com\", role = \"ctb\"), person(\"Malte\", \"Grosser\", email = \"malte.grosser@gmail.com\", role = \"ctb\"), person(\"Jonathan\", \"Zadra\", email = \"jonathan.zadra@sorensonimpact.com\", role = \"ctb\"))", - "Description": "The main janitor functions can: perfectly format data.frame column names; provide quick counts of variable combinations (i.e., frequency tables and crosstabs); and explore duplicate records. Other janitor functions nicely format the tabulation results. These tabulate-and-report functions approximate popular features of SPSS and Microsoft Excel. This package follows the principles of the \"tidyverse\" and works well with the pipe function %>%. janitor was built with beginning-to-intermediate R users in mind and is optimized for user-friendliness.", - "URL": "https://github.com/sfirke/janitor, https://sfirke.github.io/janitor/", - "BugReports": "https://github.com/sfirke/janitor/issues", - "Depends": [ - "R (>= 3.1.2)" - ], - "Imports": [ - "dplyr (>= 1.0.0)", - "hms", - "lifecycle", - "lubridate", - "magrittr", - "purrr", - "rlang", - "stringi", - "stringr", - "snakecase (>= 0.9.2)", - "tidyselect (>= 1.0.0)", - "tidyr (>= 0.7.0)" - ], - "License": "MIT + file LICENSE", - "RoxygenNote": "7.2.3", - "Suggests": [ - "dbplyr", - "knitr", - "rmarkdown", - "RSQLite", - "sf", - "testthat (>= 3.0.0)", - "tibble", - "tidygraph" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "Sam Firke [aut, cre], Bill Denney [ctb], Chris Haid [ctb], Ryan Knight [ctb], Malte Grosser [ctb], Jonathan Zadra [ctb]", - "Maintainer": "Sam Firke ", - "Repository": "CRAN" - }, "jquerylib": { "Package": "jquerylib", "Version": "0.1.4", @@ -3771,6 +2684,30 @@ "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", "Repository": "CRAN" }, + "juicyjuice": { + "Package": "juicyjuice", + "Version": "0.1.0", + "Source": "Repository", + "Title": "Inline CSS Properties into HTML Tags Using 'juice'", + "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"riannone@me.com\", c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Automattic\", role = c(\"cph\"), comment = \"juice library\"), person(\"juice contributors\", role = c(\"ctb\"), comment = \"juice library\") )", + "Description": "There are occasions where you need a piece of HTML with integrated styles. A prime example of this is HTML email. This transformation involves moving the CSS and associated formatting instructions from the style block in the head of your document into the body of the HTML. Many prominent email clients require integrated styles in HTML email; otherwise a received HTML email will be displayed without any styling. This package will quickly and precisely perform these CSS transformations when given HTML text and it does so by using the JavaScript 'juice' library.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/rich-iannone/juicyjuice", + "BugReports": "https://github.com/rich-iannone/juicyjuice/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1", + "Imports": [ + "V8 (>= 4.2.0)" + ], + "Suggests": [ + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Richard Iannone [aut, cre, cph] (), Automattic [cph] (juice library), juice contributors [ctb] (juice library)", + "Maintainer": "Richard Iannone ", + "Repository": "CRAN" + }, "kableExtra": { "Package": "kableExtra", "Version": "1.4.0", @@ -3820,6 +2757,30 @@ "Maintainer": "Hao Zhu ", "Repository": "CRAN" }, + "kernlab": { + "Package": "kernlab", + "Version": "0.9-33", + "Source": "Repository", + "Title": "Kernel-Based Machine Learning Lab", + "Authors@R": "c(person(\"Alexandros\", \"Karatzoglou\", role = c(\"aut\", \"cre\"), email = \"alexandros.karatzoglou@gmail.com\"), person(\"Alex\", \"Smola\", role = \"aut\"), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"National ICT Australia (NICTA)\", role = \"cph\"), person(c(\"Michael\", \"A.\"), \"Maniscalco\", role = c(\"ctb\", \"cph\")), person(c(\"Choon\", \"Hui\"), \"Teo\", role = \"ctb\"))", + "Description": "Kernel-based machine learning methods for classification, regression, clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods 'kernlab' includes Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver.", + "Depends": [ + "R (>= 2.10)" + ], + "Imports": [ + "methods", + "stats", + "grDevices", + "graphics" + ], + "LazyLoad": "Yes", + "License": "GPL-2", + "NeedsCompilation": "yes", + "Author": "Alexandros Karatzoglou [aut, cre], Alex Smola [aut], Kurt Hornik [aut] (), National ICT Australia (NICTA) [cph], Michael A. Maniscalco [ctb, cph], Choon Hui Teo [ctb]", + "Maintainer": "Alexandros Karatzoglou ", + "Repository": "CRAN", + "Encoding": "UTF-8" + }, "knitr": { "Package": "knitr", "Version": "1.50", @@ -3904,110 +2865,39 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, - "labelled": { - "Package": "labelled", - "Version": "2.14.1", - "Source": "Repository", - "Type": "Package", - "Title": "Manipulating Labelled Data", - "Maintainer": "Joseph Larmarange ", - "Authors@R": "c( person(\"Joseph\", \"Larmarange\", email = \"joseph@larmarange.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7097-700X\")), person(\"Daniel\", \"Ludecke\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"François\", \"Briatte\", role = \"ctb\") )", - "Description": "Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'. This package provides useful functions to deal with \"haven_labelled\" and \"haven_labelled_spss\" classes introduced by 'haven' package.", - "License": "GPL (>= 3)", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 3.2)" - ], - "Imports": [ - "haven (>= 2.4.1)", - "cli", - "dplyr (>= 1.1.0)", - "lifecycle", - "rlang (>= 1.1.0)", - "vctrs", - "stringr", - "tidyr", - "tidyselect" - ], - "Suggests": [ - "testthat (>= 3.2.0)", - "knitr", - "rmarkdown", - "questionr", - "snakecase", - "spelling" - ], - "Enhances": [ - "memisc" - ], - "URL": "https://larmarange.github.io/labelled/, https://github.com/larmarange/labelled", - "BugReports": "https://github.com/larmarange/labelled/issues", - "VignetteBuilder": "knitr", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "Language": "en-US", - "Config/testthat/edition": "3", - "Config/Needs/check": "memisc", - "NeedsCompilation": "no", - "Author": "Joseph Larmarange [aut, cre] (ORCID: ), Daniel Ludecke [ctb], Hadley Wickham [ctb], Michal Bojanowski [ctb], François Briatte [ctb]", - "Repository": "CRAN" - }, - "lambda.r": { - "Package": "lambda.r", - "Version": "1.2.4", - "Source": "Repository", - "Type": "Package", - "Title": "Modeling Data with Functional Programming", - "Date": "2019-09-15", - "Depends": [ - "R (>= 3.0.0)" - ], - "Imports": [ - "formatR" - ], - "Suggests": [ - "testit" - ], - "Author": "Brian Lee Yung Rowe", - "Maintainer": "Brian Lee Yung Rowe ", - "Description": "A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.", - "License": "LGPL-3", - "LazyLoad": "yes", - "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "later": { "Package": "later", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", - "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later", - "BugReports": "https://github.com/r-lib/later/issues", "License": "MIT + file LICENSE", + "URL": "https://later.r-lib.org, https://github.com/r-lib/later", + "BugReports": "https://github.com/r-lib/later/issues", "Imports": [ "Rcpp (>= 0.12.9)", "rlang" ], - "LinkingTo": [ - "Rcpp" - ], - "RoxygenNote": "7.3.2", "Suggests": [ "knitr", "nanonext", - "R6", "rmarkdown", - "testthat (>= 2.1.0)" + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "Rcpp" ], "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-18", "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Charlie Gao [aut] (), Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", - "Maintainer": "Winston Chang ", + "Author": "Winston Chang [aut], Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", + "Maintainer": "Charlie Gao ", "Repository": "CRAN" }, "lattice": { @@ -4049,68 +2939,6 @@ "Maintainer": "Deepayan Sarkar ", "Repository": "CRAN" }, - "lava": { - "Package": "lava", - "Version": "1.8.1", - "Source": "Repository", - "Type": "Package", - "Title": "Latent Variable Models", - "Authors@R": "c(person(\"Klaus K.\", \"Holst\", email=\"klaus@holst.it\", role=c(\"aut\", \"cre\")), person(\"Brice\", \"Ozenne\", role = \"ctb\"), person(\"Thomas\", \"Gerds\", role = \"ctb\"))", - "Author": "Klaus K. Holst [aut, cre], Brice Ozenne [ctb], Thomas Gerds [ctb]", - "Maintainer": "Klaus K. Holst ", - "Description": "A general implementation of Structural Equation Models with latent variables (MLE, 2SLS, and composite likelihood estimators) with both continuous, censored, and ordinal outcomes (Holst and Budtz-Joergensen (2013) ). Mixture latent variable models and non-linear latent variable models (Holst and Budtz-Joergensen (2020) ). The package also provides methods for graph exploration (d-separation, back-door criterion), simulation of general non-linear latent variable models, and estimation of influence functions for a broad range of statistical models.", - "URL": "https://kkholst.github.io/lava/", - "BugReports": "https://github.com/kkholst/lava/issues", - "License": "GPL-3", - "LazyLoad": "yes", - "Depends": [ - "R (>= 3.0)" - ], - "Imports": [ - "cli", - "future.apply", - "graphics", - "grDevices", - "methods", - "numDeriv", - "progressr", - "stats", - "survival", - "SQUAREM", - "utils" - ], - "Suggests": [ - "KernSmooth", - "Rgraphviz", - "data.table", - "ellipse", - "fields", - "geepack", - "graph", - "knitr", - "rmarkdown", - "igraph (>= 0.6)", - "lavaSearch2", - "lme4 (>= 1.1.35.1)", - "MASS", - "Matrix (>= 1.6.3)", - "mets (>= 1.1)", - "nlme", - "optimx", - "polycor", - "quantreg", - "rgl", - "targeted (>= 0.4)", - "testthat (>= 0.11)", - "visNetwork" - ], - "VignetteBuilder": "knitr,rmarkdown", - "ByteCompile": "yes", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Repository": "RSPM" - }, "lazyeval": { "Package": "lazyeval", "Version": "0.2.2", @@ -4137,66 +2965,6 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, - "lhs": { - "Package": "lhs", - "Version": "1.2.0", - "Source": "Repository", - "Title": "Latin Hypercube Samples", - "Authors@R": "person(given = \"Rob\", family = \"Carnell\", role = c(\"aut\", \"cre\"), email = \"bertcarnell@gmail.com\")", - "Description": "Provides a number of methods for creating and augmenting Latin Hypercube Samples and Orthogonal Array Latin Hypercube Samples.", - "License": "GPL-3", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 3.4.0)" - ], - "LinkingTo": [ - "Rcpp" - ], - "Imports": [ - "Rcpp" - ], - "Suggests": [ - "testthat", - "DoE.base", - "knitr", - "rmarkdown" - ], - "URL": "https://github.com/bertcarnell/lhs", - "BugReports": "https://github.com/bertcarnell/lhs/issues", - "RoxygenNote": "7.3.2", - "VignetteBuilder": "knitr", - "NeedsCompilation": "yes", - "Author": "Rob Carnell [aut, cre]", - "Maintainer": "Rob Carnell ", - "Repository": "RSPM" - }, - "libcoin": { - "Package": "libcoin", - "Version": "1.0-10", - "Source": "Repository", - "Title": "Linear Test Statistics for Permutation Inference", - "Date": "2023-09-26", - "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Henric\", \"Winell\", role = \"aut\", comment = c(ORCID = \"0000-0001-7995-3047\")))", - "Description": "Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) . This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.", - "Depends": [ - "R (>= 3.4.0)" - ], - "Suggests": [ - "coin" - ], - "Imports": [ - "stats", - "mvtnorm" - ], - "LinkingTo": [ - "mvtnorm" - ], - "NeedsCompilation": "yes", - "License": "GPL-2", - "Author": "Torsten Hothorn [aut, cre] (), Henric Winell [aut] ()", - "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" - }, "lifecycle": { "Package": "lifecycle", "Version": "1.0.4", @@ -4238,85 +3006,51 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, - "listenv": { - "Package": "listenv", - "Version": "0.9.1", + "litedown": { + "Package": "litedown", + "Version": "0.7", "Source": "Repository", + "Type": "Package", + "Title": "A Lightweight Version of R Markdown", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Tim\", \"Taylor\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8587-7113\")), person() )", + "Description": "Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). Book and website projects of multiple input documents are also supported.", "Depends": [ - "R (>= 3.1.2)" - ], - "Suggests": [ - "R.utils", - "R.rsp", - "markdown" - ], - "VignetteBuilder": "R.rsp", - "Title": "Environments Behaving (Almost) as Lists", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", - "Description": "List environments are environments that have list-like properties. For instance, the elements of a list environment are ordered and can be accessed and iterated over using index subsetting, e.g. 'x <- listenv(a = 1, b = 2); for (i in seq_along(x)) x[[i]] <- x[[i]] ^ 2; y <- as.list(x)'.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://listenv.futureverse.org, https://github.com/HenrikBengtsson/listenv", - "BugReports": "https://github.com/HenrikBengtsson/listenv/issues", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph]", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "lobstr": { - "Package": "lobstr", - "Version": "1.1.2", - "Source": "Repository", - "Title": "Visualize R Data Structures with Trees", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", - "Description": "A set of tools for inspecting and understanding R data structures inspired by str(). Includes ast() for visualizing abstract syntax trees, ref() for showing shared references, cst() for showing call stack trees, and obj_size() for computing object sizes.", - "License": "MIT + file LICENSE", - "URL": "https://lobstr.r-lib.org/, https://github.com/r-lib/lobstr", - "BugReports": "https://github.com/r-lib/lobstr/issues", - "Depends": [ - "R (>= 3.2)" + "R (>= 3.2.0)" ], "Imports": [ - "crayon", - "methods", - "prettyunits", - "rlang (>= 1.0.0)" + "utils", + "commonmark (>= 1.9.5)", + "xfun (>= 0.52)" ], "Suggests": [ - "covr", - "pillar", - "pkgdown", - "testthat (>= 3.0.0)" + "rbibutils", + "rstudioapi", + "tinytex" ], - "LinkingTo": [ - "cpp11 (>= 0.4.2)" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/litedown", + "BugReports": "https://github.com/yihui/litedown/issues", + "VignetteBuilder": "litedown", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", - "RoxygenNote": "7.2.0", - "SystemRequirements": "C++11", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre], RStudio [cph]", - "Maintainer": "Hadley Wickham ", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Tim Taylor [ctb] ()", + "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "lpSolve": { - "Package": "lpSolve", - "Version": "5.6.23", + "lmodel2": { + "Package": "lmodel2", + "Version": "1.7-4", "Source": "Repository", - "Title": "Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Michel\", \"Berkelaar\", role = \"aut\") )", - "Description": "Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. In this implementation we supply a \"wrapper\" function in C and some R functions that solve general linear/integer problems, assignment problems, and transportation problems. This version calls lp_solve version 5.5.", - "License": "LGPL-2", - "URL": "https://github.com/gaborcsardi/lpSolve", - "BugReports": "https://github.com/gaborcsardi/lpSolve/issues", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [cre], Michel Berkelaar [aut]", - "Maintainer": "Gábor Csárdi ", + "Title": "Model II Regression", + "Authors@R": "c(person(given = \"Pierre\", family = \"Legendre\", role = \"aut\", email = \"pierre.legendre@umontreal.ca\"), person(given = \"Jari\", family = \"Oksanen\", role = \"cre\", email = \"jhoksane@gmail.com\"))", + "Description": "Computes model II simple linear regression using ordinary least squares (OLS), major axis (MA), standard major axis (SMA), and ranged major axis (RMA).", + "BugReports": "https://github.com/vegandevs/lmodel2/issues", + "License": "GPL-2", + "LazyLoad": "yes", + "NeedsCompilation": "no", + "Author": "Pierre Legendre [aut], Jari Oksanen [cre]", + "Maintainer": "Jari Oksanen ", "Repository": "CRAN" }, "lubridate": { @@ -4396,6 +3130,38 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, + "markdown": { + "Package": "markdown", + "Version": "2.0", + "Source": "Repository", + "Type": "Package", + "Title": "Render Markdown with 'commonmark'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Jeffrey\", \"Horner\", role = \"aut\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Adam\", \"November\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Andrzej\", \"Oles\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Render Markdown to full and lightweight HTML/LaTeX documents with the 'commonmark' package. This package has been superseded by 'litedown'.", + "Depends": [ + "R (>= 2.11.1)" + ], + "Imports": [ + "utils", + "xfun", + "litedown (>= 0.6)" + ], + "Suggests": [ + "knitr", + "rmarkdown (>= 2.18)", + "yaml", + "RCurl" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/markdown", + "BugReports": "https://github.com/rstudio/markdown/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), JJ Allaire [aut], Jeffrey Horner [aut], Henrik Bengtsson [ctb], Jim Hester [ctb], Yixuan Qiu [ctb], Kohske Takahashi [ctb], Adam November [ctb], Nacho Caballero [ctb], Jeroen Ooms [ctb], Thomas Leeper [ctb], Joe Cheng [ctb], Andrzej Oles [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, "memoise": { "Package": "memoise", "Version": "2.0.1", @@ -4480,29 +3246,6 @@ "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "miniUI": { - "Package": "miniUI", - "Version": "0.1.2", - "Source": "Repository", - "Type": "Package", - "Title": "Shiny UI Widgets for Small Screens", - "Authors@R": "c( person(\"Joe\", \"Cheng\", role = c(\"cre\", \"aut\"), email = \"joe@posit.co\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Provides UI widget and layout functions for writing Shiny apps that work well on small screens.", - "License": "GPL-3", - "URL": "https://github.com/rstudio/miniUI", - "BugReports": "https://github.com/rstudio/miniUI/issues", - "Imports": [ - "shiny (>= 0.13)", - "htmltools (>= 0.3)", - "utils" - ], - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Joe Cheng [cre, aut], Posit Software, PBC [cph, fnd] (03wc8by49)", - "Maintainer": "Joe Cheng ", - "Repository": "CRAN" - }, "minqa": { "Package": "minqa", "Version": "1.2.8", @@ -4523,43 +3266,7 @@ "SystemRequirements": "GNU make", "NeedsCompilation": "yes", "Repository": "CRAN", - "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]", - "Encoding": "UTF-8" - }, - "mirai": { - "Package": "mirai", - "Version": "2.4.1", - "Source": "Repository", - "Type": "Package", - "Title": "Minimalist Async Evaluation Framework for R", - "Authors@R": "c( person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Hibiki AI Limited\", role = \"cph\") )", - "Description": "Designed for simplicity, a 'mirai' evaluates an R expression asynchronously in a parallel process, locally or distributed over the network. Modern networking and concurrency, built on 'nanonext' and 'NNG', ensures reliable scheduling over fast inter-process communications or TCP/IP secured by TLS. Launch remote resources via SSH or cluster managers for distributed computing. Scales efficiently to millions of tasks over thousands of connections, requiring no storage on the file system due to its inherently queued architecture. Innovative features include event-driven promises, asynchronous parallel map, and seamless serialization of otherwise non-exportable reference objects.", - "License": "MIT + file LICENSE", - "URL": "https://mirai.r-lib.org, https://github.com/r-lib/mirai", - "BugReports": "https://github.com/r-lib/mirai/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "nanonext (>= 1.6.2)" - ], - "Suggests": [ - "cli", - "litedown" - ], - "Enhances": [ - "parallel", - "promises" - ], - "VignetteBuilder": "litedown", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/usethis/last-upkeep": "2025-04-23", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Charlie Gao [aut, cre] (ORCID: ), Joe Cheng [ctb], Posit Software, PBC [cph, fnd] (ROR: ), Hibiki AI Limited [cph]", - "Maintainer": "Charlie Gao ", - "Repository": "CRAN" + "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" }, "mitools": { "Package": "mitools", @@ -4580,74 +3287,34 @@ ], "License": "GPL-2", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, - "modeldata": { - "Package": "modeldata", - "Version": "1.4.0", + "mixtools": { + "Package": "mixtools", + "Version": "2.0.0.1", "Source": "Repository", - "Title": "Data Sets Useful for Modeling Examples", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Data sets used for demonstrating or testing model-related packages are contained in this package.", - "License": "MIT + file LICENSE", - "URL": "https://modeldata.tidymodels.org, https://github.com/tidymodels/modeldata", - "BugReports": "https://github.com/tidymodels/modeldata/issues", + "Date": "2022-12-04", + "Title": "Tools for Analyzing Finite Mixture Models", + "Authors@R": "c(person(\"Derek\", \"Young\", role = c(\"aut\", \"cre\"), email = \"derek.young@uky.edu\", comment = c(ORCID = \"0000-0002-3048-3803\")), person(\"Tatiana\", \"Benaglia\", role = \"aut\"), person(\"Didier\", \"Chauveau\", role = \"aut\"), person(\"David\", \"Hunter\", role = \"aut\"), person(\"Kedai\", \"Cheng\", role = \"aut\"), person(\"Ryan\", \"Elmore\", role = \"ctb\"), person(\"Thomas\", \"Hettmansperger\", role = \"ctb\"), person(\"Hoben\", \"Thomas\", role = \"ctb\"), person(\"Fengjuan\", \"Xuan\", role = \"ctb\"))", "Depends": [ - "R (>= 3.4)" + "R (>= 4.0.0)" ], "Imports": [ - "dplyr", + "kernlab", "MASS", - "purrr", - "rlang", - "tibble" + "plotly", + "scales", + "segmented", + "stats", + "survival" ], - "Suggests": [ - "covr", - "testthat (>= 3.0.0)", - "ggplot2" - ], - "Config/Needs/website": "tidyverse/tidytemplate, tidymodels/tidymodels", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "LazyDataCompression": "xz", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Max Kuhn ", - "Repository": "RSPM" - }, - "modelenv": { - "Package": "modelenv", - "Version": "0.2.0", - "Source": "Repository", - "Title": "Provide Tools to Register Models for Use in 'tidymodels'", - "Authors@R": "c( person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0679-1945\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "An developer focused, low dependency package in 'tidymodels' that provides functions to register how models are to be used. Functions to register models are complimented with accessor functions to retrieve registered model information to aid in model fitting and error handling.", - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Imports": [ - "cli", - "glue", - "rlang (>= 1.1.0)", - "tibble", - "vctrs" - ], - "Suggests": [ - "covr", - "testthat (>= 3.0.0)" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "URL": "https://github.com/tidymodels/modelenv, http://modelenv.tidymodels.org/", - "BugReports": "https://github.com/tidymodels/modelenv/issues", - "NeedsCompilation": "no", - "Author": "Emil Hvitfeldt [aut, cre] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Emil Hvitfeldt ", - "Repository": "RSPM" + "URL": "https://github.com/dsy109/mixtools", + "Description": "Analyzes finite mixture models for various parametric and semiparametric settings. This includes mixtures of parametric distributions (normal, multivariate normal, multinomial, gamma), various Reliability Mixture Models (RMMs), mixtures-of-regressions settings (linear regression, logistic regression, Poisson regression, linear regression with changepoints, predictor-dependent mixing proportions, random effects regressions, hierarchical mixtures-of-experts), and tools for selecting the number of components (bootstrapping the likelihood ratio test statistic, mixturegrams, and model selection criteria). Bayesian estimation of mixtures-of-linear-regressions models is available as well as a novel data depth method for obtaining credible bands. This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772 and the Chan Zuckerberg Initiative: Essential Open Source Software for Science (Grant No. 2020-255193).", + "License": "GPL (>= 2)", + "NeedsCompilation": "yes", + "Author": "Derek Young [aut, cre] (), Tatiana Benaglia [aut], Didier Chauveau [aut], David Hunter [aut], Kedai Cheng [aut], Ryan Elmore [ctb], Thomas Hettmansperger [ctb], Hoben Thomas [ctb], Fengjuan Xuan [ctb]", + "Maintainer": "Derek Young ", + "Repository": "CRAN" }, "modelr": { "Package": "modelr", @@ -4688,6 +3355,77 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, + "multcomp": { + "Package": "multcomp", + "Version": "1.4-28", + "Source": "Repository", + "Title": "Simultaneous Inference in General Parametric Models", + "Date": "2025-01-29", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Peter\", \"Westfall\", role = \"aut\"), person(\"Richard M.\", \"Heiberger\", role = \"ctb\"), person(\"Andre\", \"Schuetzenmeister\", role = \"ctb\"), person(\"Susan\", \"Scheibe\", role = \"ctb\"))", + "Description": "Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn, Westfall, 2010, CRC Press).", + "Depends": [ + "stats", + "graphics", + "mvtnorm (>= 1.0-10)", + "survival (>= 2.39-4)", + "TH.data (>= 1.0-2)" + ], + "Imports": [ + "sandwich (>= 2.3-0)", + "codetools" + ], + "Suggests": [ + "lme4 (>= 0.999375-16)", + "nlme", + "robustbase", + "coin", + "MASS", + "foreign", + "xtable", + "lmtest", + "coxme (>= 2.2-1)", + "SimComp", + "ISwR", + "tram (>= 0.2-5)", + "fixest (>= 0.10)", + "glmmTMB", + "DoseFinding", + "HH", + "asd", + "gsDesign", + "lattice" + ], + "URL": "http://multcomp.R-forge.R-project.org, https://www.routledge.com/Multiple-Comparisons-Using-R/Bretz-Hothorn-Westfall/p/book/9781584885740", + "LazyData": "yes", + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre] (), Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb], Susan Scheibe [ctb]", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" + }, + "multcompView": { + "Package": "multcompView", + "Version": "0.1-10", + "Source": "Repository", + "Type": "Package", + "Title": "Visualizations of Paired Comparisons", + "Date": "2024-04-04", + "Author": "Spencer Graves, Hans-Peter Piepho and Luciano Selzer with help from Sundar Dorai-Raj", + "Maintainer": "Luciano Selzer ", + "Description": "Convert a logical vector or a vector of p-values or a correlation, difference, or distance matrix into a display identifying the pairs for which the differences were not significantly different. Designed for use in conjunction with the output of functions like TukeyHSD, dist{stats}, simint, simtest, csimint, csimtest{multcomp}, friedmanmc, kruskalmc{pgirmess}.", + "License": "GPL", + "Imports": [ + "grid" + ], + "Suggests": [ + "multcomp", + "pgirmess", + "MASS" + ], + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Repository": "CRAN" + }, "mvtnorm": { "Package": "mvtnorm", "Version": "1.3-3", @@ -4714,40 +3452,6 @@ "Repository": "CRAN", "Encoding": "UTF-8" }, - "nanonext": { - "Package": "nanonext", - "Version": "1.6.2", - "Source": "Repository", - "Type": "Package", - "Title": "NNG (Nanomsg Next Gen) Lightweight Messaging Library", - "Authors@R": "c( person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Hibiki AI Limited\", role = \"cph\"), person(\"R Consortium\", role = \"fnd\") )", - "Description": "R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is a socket library for reliable, high-performance messaging over in-process, IPC, TCP, WebSocket and secure TLS transports. Implements 'Scalability Protocols', a standard for common communications patterns including publish/subscribe, request/reply and service discovery. As its own threaded concurrency framework, provides a toolkit for asynchronous programming and distributed computing. Intuitive 'aio' objects resolve automatically when asynchronous operations complete, and synchronisation primitives allow R to wait upon events signalled by concurrent threads.", - "License": "MIT + file LICENSE", - "URL": "https://nanonext.r-lib.org, https://github.com/r-lib/nanonext", - "BugReports": "https://github.com/r-lib/nanonext/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Suggests": [ - "later", - "litedown" - ], - "Enhances": [ - "promises" - ], - "VignetteBuilder": "litedown", - "Biarch": "true", - "Config/build/compilation-database": "true", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/usethis/last-upkeep": "2025-04-23", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "SystemRequirements": "'libnng' >= 1.9 and 'libmbedtls' >= 2.5, or 'cmake' and 'xz' to compile NNG and/or Mbed TLS included in package sources", - "NeedsCompilation": "yes", - "Author": "Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Hibiki AI Limited [cph], R Consortium [fnd]", - "Maintainer": "Charlie Gao ", - "Repository": "CRAN" - }, "nlme": { "Package": "nlme", "Version": "3.1-168", @@ -4782,58 +3486,6 @@ "Maintainer": "R Core Team ", "Repository": "CRAN" }, - "nnet": { - "Package": "nnet", - "Version": "7.3-20", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-01-01", - "Depends": [ - "R (>= 3.0.0)", - "stats", - "utils" - ], - "Suggests": [ - "MASS" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", - "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.", - "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN" - }, - "nsyllable": { - "Package": "nsyllable", - "Version": "1.0.1", - "Source": "Repository", - "Title": "Count Syllables in Character Vectors", - "Description": "Counts syllables in character vectors for English words. Imputes syllables as the number of vowel sequences for words not found.", - "Authors@R": "c( person(\"Kenneth\", \"Benoit\", email = \"kbenoit@lse.ac.uk\", role = c(\"cre\", \"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-0797-564X\")), person(\"Carnegie Mellon University\", email = \"air+cmudict@cs.cmu.edu\", role = \"cph\", comment = \"CMU Pronunciation Dictionary (c) 1993-2015\") )", - "License": "GPL-3", - "Depends": [ - "R (>= 2.10)" - ], - "Suggests": [ - "knitr", - "testthat", - "spelling" - ], - "URL": "https://github.com/quanteda/nsyllable", - "Encoding": "UTF-8", - "BugReports": "https://github.com/quanteda/nsyllable/issues", - "LazyData": "TRUE", - "Language": "en-GB", - "RoxygenNote": "7.1.2", - "NeedsCompilation": "no", - "Author": "Kenneth Benoit [cre, aut, cph] (), Carnegie Mellon University [cph] (CMU Pronunciation Dictionary (c) 1993-2015)", - "Maintainer": "Kenneth Benoit ", - "Repository": "CRAN" - }, "numDeriv": { "Package": "numDeriv", "Version": "2016.8-1.1", @@ -4851,8 +3503,7 @@ "Maintainer": "Paul Gilbert ", "URL": "http://optimizer.r-forge.r-project.org/", "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "openssl": { "Package": "openssl", @@ -4887,345 +3538,6 @@ "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, - "pROC": { - "Package": "pROC", - "Version": "1.18.5", - "Source": "Repository", - "Type": "Package", - "Title": "Display and Analyze ROC Curves", - "Date": "2023-11-01", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 2.14)" - ], - "Imports": [ - "methods", - "plyr", - "Rcpp (>= 0.11.1)" - ], - "Suggests": [ - "microbenchmark", - "tcltk", - "MASS", - "logcondens", - "doParallel", - "testthat", - "vdiffr", - "ggplot2", - "rlang" - ], - "LinkingTo": [ - "Rcpp" - ], - "Authors@R": "c(person(\"Xavier\", \"Robin\", role = c(\"cre\", \"aut\"), email = \"pROC-cran@xavier.robin.name\", comment = c(ORCID = \"0000-0002-6813-3200\")), person(\"Natacha\", \"Turck\", role = \"aut\"), person(\"Alexandre\", \"Hainard\", role = \"aut\"), person(\"Natalia\", \"Tiberti\", role = \"aut\"), person(\"Frédérique\", \"Lisacek\", role = \"aut\"), person(\"Jean-Charles\", \"Sanchez\", role = \"aut\"), person(\"Markus\", \"Müller\", role = \"aut\"), person(\"Stefan\", \"Siegert\", role = \"ctb\", comment = \"Fast DeLong code\", email = \"stefan_siegert@gmx.de\"), person(\"Matthias\", \"Doering\", role = \"ctb\", comment = \"Hand & Till Multiclass\"), person(\"Zane\", \"Billings\", role = \"ctb\", comment = \"DeLong paired test CI\"))", - "Description": "Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.", - "License": "GPL (>= 3)", - "URL": "https://xrobin.github.io/pROC/", - "BugReports": "https://github.com/xrobin/pROC/issues", - "LazyData": "yes", - "NeedsCompilation": "yes", - "Author": "Xavier Robin [cre, aut] (), Natacha Turck [aut], Alexandre Hainard [aut], Natalia Tiberti [aut], Frédérique Lisacek [aut], Jean-Charles Sanchez [aut], Markus Müller [aut], Stefan Siegert [ctb] (Fast DeLong code), Matthias Doering [ctb] (Hand & Till Multiclass), Zane Billings [ctb] (DeLong paired test CI)", - "Maintainer": "Xavier Robin ", - "Repository": "CRAN" - }, - "pander": { - "Package": "pander", - "Version": "0.6.6", - "Source": "Repository", - "Authors@R": "c( person(\"Gergely\", \"Daróczi\", , \"daroczig@rapporter.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3149-8537\")), person(\"Roman\", \"Tsegelskyi\", , \"roman.tsegelskyi@gmail.com\", role = c(\"aut\")))", - "Title": "An R 'Pandoc' Writer", - "Type": "Package", - "Encoding": "UTF-8", - "Description": "Contains some functions catching all messages, 'stdout' and other useful information while evaluating R code and other helpers to return user specified text elements (like: header, paragraph, table, image, lists etc.) in 'pandoc' markdown or several type of R objects similarly automatically transformed to markdown format. Also capable of exporting/converting (the resulting) complex 'pandoc' documents to e.g. HTML, 'PDF', 'docx' or 'odt'. This latter reporting feature is supported in brew syntax or with a custom reference class with a smarty caching 'backend'.", - "Date": "2025-03-01", - "URL": "https://rapporter.github.io/pander/", - "BugReports": "https://github.com/rapporter/pander/issues", - "License": "AGPL-3 | file LICENSE", - "Depends": [ - "R (>= 2.15.0)" - ], - "Imports": [ - "grDevices", - "graphics", - "methods", - "utils", - "stats", - "digest", - "tools", - "Rcpp" - ], - "Suggests": [ - "grid", - "lattice", - "ggplot2 (>= 0.9.2)", - "sylly", - "sylly.en", - "logger", - "survival", - "microbenchmark", - "zoo", - "nlme", - "descr", - "MASS", - "knitr", - "rmarkdown", - "tables", - "reshape", - "memisc", - "Epi", - "randomForest", - "tseries", - "gtable", - "rms", - "forecast", - "data.table" - ], - "SystemRequirements": "pandoc (https://johnmacfarlane.net/pandoc) for exporting markdown files to other formats.", - "LinkingTo": [ - "Rcpp" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Gergely Daróczi [aut, cre] (), Roman Tsegelskyi [aut]", - "Maintainer": "Gergely Daróczi ", - "Repository": "CRAN" - }, - "parallelly": { - "Package": "parallelly", - "Version": "1.45.0", - "Source": "Repository", - "Title": "Enhancing the 'parallel' Package", - "Imports": [ - "parallel", - "tools", - "utils" - ], - "Suggests": [ - "commonmark", - "base64enc" - ], - "VignetteBuilder": "parallelly", - "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Mike\", \"Cheng\", role = c(\"ctb\"), email = \"mikefc@coolbutuseless.com\") )", - "Description": "Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. 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Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "ByteCompile": "TRUE", - "URL": "https://parallelly.futureverse.org, https://github.com/futureverse/parallelly", - "BugReports": "https://github.com/futureverse/parallelly/issues", - "Language": "en-US", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: ), Mike Cheng [ctb]", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM" - }, - "parsnip": { - "Package": "parsnip", - "Version": "1.3.2", - "Source": "Repository", - "Title": "A Common API to Modeling and Analysis Functions", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Maintainer": "Max Kuhn ", - "Description": "A common interface is provided to allow users to specify a model without having to remember the different argument names across different functions or computational engines (e.g. 'R', 'Spark', 'Stan', 'H2O', etc).", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/parsnip, https://parsnip.tidymodels.org/", - "BugReports": "https://github.com/tidymodels/parsnip/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "cli", - "dplyr (>= 1.1.0)", - "generics (>= 0.1.2)", - "ggplot2", - "globals", - "glue", - "hardhat (>= 1.4.1)", - "lifecycle", - "magrittr", - "pillar", - "prettyunits", - "purrr (>= 1.0.0)", - "rlang (>= 1.1.0)", - "sparsevctrs (>= 0.2.0)", - "stats", - "tibble (>= 2.1.1)", - "tidyr (>= 1.3.0)", - "utils", - "vctrs (>= 0.6.0)", - "withr" - ], - "Suggests": [ - "bench", - "C50", - "covr", - "dials (>= 1.1.0)", - "earth", - "ggrepel", - "keras", - "kernlab", - "kknn", - "knitr", - "LiblineaR", - "MASS", - "Matrix", - "methods", - "mgcv", - "modeldata", - "nlme", - "prodlim", - "ranger (>= 0.12.0)", - "remotes", - "rmarkdown", - "rpart", - "sparklyr (>= 1.0.0)", - "survival", - "tensorflow", - "testthat (>= 3.0.0)", - "xgboost (>= 1.5.0.1)" - ], - "VignetteBuilder": "knitr", - "ByteCompile": "true", - "Config/Needs/website": "brulee, C50, dbarts, earth, glmnet, keras, kernlab, kknn, LiblineaR, mgcv, nnet, parsnip, quantreg, randomForest, ranger, rpart, rstanarm, tidymodels/tidymodels, tidyverse/tidytemplate, rstudio/reticulate, xgboost, rmarkdown", - "Config/rcmdcheck/ignore-inconsequential-notes": "true", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre], Davis Vaughan [aut], Emil Hvitfeldt [ctb], Posit Software, PBC [cph, fnd] (ROR: )", - "Repository": "RSPM" - }, - "partykit": { - "Package": "partykit", - "Version": "1.2-24", - "Source": "Repository", - "Title": "A Toolkit for Recursive Partytioning", - "Date": "2025-05-02", - "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Heidi\", family = \"Seibold\", role = \"ctb\", email = \"heidi@seibold.co\", comment = c(ORCID = \"0000-0002-8960-9642\")), person(given = \"Achim\", family = \"Zeileis\", role = \"aut\", email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", - "Description": "A toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. This unified infrastructure can be used for reading/coercing tree models from different sources ('rpart', 'RWeka', 'PMML') yielding objects that share functionality for print()/plot()/predict() methods. Furthermore, new and improved reimplementations of conditional inference trees (ctree()) and model-based recursive partitioning (mob()) from the 'party' package are provided based on the new infrastructure. A description of this package was published by Hothorn and Zeileis (2015) .", - "Depends": [ - "R (>= 3.5.0)", - "graphics", - "grid", - "libcoin (>= 1.0-0)", - "mvtnorm" - ], - "Imports": [ - "grDevices", - "stats", - "utils", - "survival", - "Formula (>= 1.2-1)", - "inum (>= 1.0-0)", - "rpart (>= 4.1-11)" - ], - "Suggests": [ - "XML", - "pmml", - "rJava", - "sandwich", - "strucchange", - "vcd", - "AER", - "mlbench", - "TH.data (>= 1.0-3)", - "coin (>= 1.1-0)", - "RWeka (>= 0.4-19)", - "datasets", - "parallel", - "psychotools (>= 0.3-0)", - "psychotree", - "party (>= 1.3-0)", - "randomForest" - ], - "LazyData": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://partykit.r-forge.r-project.org/partykit/", - "RoxygenNote": "6.1.1", - "NeedsCompilation": "yes", - "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Heidi Seibold [ctb] (ORCID: ), Achim Zeileis [aut] (ORCID: )", - "Maintainer": "Torsten Hothorn ", - "Repository": "CRAN" - }, - "patchwork": { - "Package": "patchwork", - "Version": "1.3.1", - "Source": "Repository", - "Type": "Package", - "Title": "The Composer of Plots", - "Authors@R": "person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\"))", - "Maintainer": "Thomas Lin Pedersen ", - "Description": "The 'ggplot2' package provides a strong API for sequentially building up a plot, but does not concern itself with composition of multiple plots. 'patchwork' is a package that expands the API to allow for arbitrarily complex composition of plots by, among others, providing mathematical operators for combining multiple plots. Other packages that try to address this need (but with a different approach) are 'gridExtra' and 'cowplot'.", - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "Imports": [ - "ggplot2 (>= 3.0.0)", - "gtable (>= 0.3.6)", - "grid", - "stats", - "grDevices", - "utils", - "graphics", - "rlang (>= 1.0.0)", - "cli", - "farver" - ], - "RoxygenNote": "7.3.2", - "URL": "https://patchwork.data-imaginist.com, https://github.com/thomasp85/patchwork", - "BugReports": "https://github.com/thomasp85/patchwork/issues", - "Suggests": [ - "knitr", - "rmarkdown", - "gridGraphics", - "gridExtra", - "ragg", - "testthat (>= 2.1.0)", - "vdiffr", - "covr", - "png", - "gt (>= 0.11.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "gifski", - "NeedsCompilation": "no", - "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: )", - "Repository": "RSPM" - }, - "pdftools": { - "Package": "pdftools", - "Version": "3.5.0", - "Source": "Repository", - "Type": "Package", - "Title": "Text Extraction, Rendering and Converting of PDF Documents", - "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))", - "Description": "Utilities based on 'libpoppler' for extracting text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further processing in R.", - "License": "MIT + file LICENSE", - "URL": "https://ropensci.r-universe.dev/pdftools, https://docs.ropensci.org/pdftools/", - "BugReports": "https://github.com/ropensci/pdftools/issues", - "SystemRequirements": "Poppler C++ API: libpoppler-cpp-dev (deb) or poppler-cpp-devel (rpm), and poppler-data (rpm/deb) package.", - "Encoding": "UTF-8", - "Imports": [ - "Rcpp (>= 0.12.12)", - "qpdf" - ], - "LinkingTo": [ - "Rcpp" - ], - "Suggests": [ - "png", - "webp", - "tesseract", - "testthat" - ], - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] ()", - "Maintainer": "Jeroen Ooms ", - "Repository": "CRAN" - }, "pillar": { "Package": "pillar", "Version": "1.11.0", @@ -5307,6 +3619,83 @@ "NeedsCompilation": "no", "Repository": "CRAN" }, + "plotly": { + "Package": "plotly", + "Version": "4.11.0", + "Source": "Repository", + "Title": "Create Interactive Web Graphics via 'plotly.js'", + "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))", + "License": "MIT + file LICENSE", + "Description": "Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.", + "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/", + "BugReports": "https://github.com/plotly/plotly.R/issues", + "Depends": [ + "R (>= 3.2.0)", + "ggplot2 (>= 3.0.0)" + ], + "Imports": [ + "tools", + "scales", + "httr (>= 1.3.0)", + "jsonlite (>= 1.6)", + "magrittr", + "digest", + "viridisLite", + "base64enc", + "htmltools (>= 0.3.6)", + "htmlwidgets (>= 1.5.2.9001)", + "tidyr (>= 1.0.0)", + "RColorBrewer", + "dplyr", + "vctrs", + "tibble", + "lazyeval (>= 0.2.0)", + "rlang (>= 1.0.0)", + "crosstalk", + "purrr", + "data.table", + "promises" + ], + "Suggests": [ + "MASS", + "maps", + "hexbin", + "ggthemes", + "GGally", + "ggalluvial", + "testthat", + "knitr", + "shiny (>= 1.1.0)", + "shinytest2", + "curl", + "rmarkdown", + "Cairo", + "broom", + "webshot", + "listviewer", + "dendextend", + "sf", + "png", + "IRdisplay", + "processx", + "plotlyGeoAssets", + "forcats", + "withr", + "palmerpenguins", + "rversions", + "reticulate", + "rsvg", + "ggridges" + ], + "LazyData": "true", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Config/Needs/check": "tidyverse/ggplot2, ggobi/GGally, rcmdcheck, devtools, reshape2, s2", + "NeedsCompilation": "no", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (ORCID: ), Pedro Despouy [aut], Salim Brüggemann [ctb] (ORCID: ), Plotly Technologies Inc. [cph]", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" + }, "plyr": { "Package": "plyr", "Version": "1.8.9", @@ -5344,6 +3733,28 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, + "polynom": { + "Package": "polynom", + "Version": "1.4-1", + "Source": "Repository", + "Title": "A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations", + "Authors@R": "c(person(\"Bill\", \"Venables\", role = c(\"aut\", \"cre\"), email = \"Bill.Venables@gmail.com\", comment = \"S original\"), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = \"R port\"), person(\"Martin\", \"Maechler\", role = \"aut\", email = \"maechler@stat.math.ethz.ch\", comment = \"R port\"))", + "Description": "A collection of functions to implement a class for univariate polynomial manipulations.", + "Imports": [ + "stats", + "graphics" + ], + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Bill Venables [aut, cre] (S original), Kurt Hornik [aut] (R port), Martin Maechler [aut] (R port)", + "Maintainer": "Bill Venables ", + "Suggests": [ + "knitr", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "Repository": "CRAN" + }, "prettyunits": { "Package": "prettyunits", "Version": "1.2.0", @@ -5369,67 +3780,6 @@ "Maintainer": "Gabor Csardi ", "Repository": "CRAN" }, - "probably": { - "Package": "probably", - "Version": "1.1.0", - "Source": "Repository", - "Title": "Tools for Post-Processing Predicted Values", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Edgar\", \"Ruiz\", , \"edgar@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Models can be improved by post-processing class probabilities, by: recalibration, conversion to hard probabilities, assessment of equivocal zones, and other activities. 'probably' contains tools for conducting these operations as well as calibration tools and conformal inference techniques for regression models.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/probably, https://probably.tidymodels.org", - "BugReports": "https://github.com/tidymodels/probably/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "butcher", - "cli", - "dplyr (>= 1.1.0)", - "furrr", - "generics (>= 0.1.3)", - "ggplot2", - "hardhat", - "pillar", - "purrr", - "rlang (>= 1.1.0)", - "tidyr (>= 1.3.0)", - "tidyselect (>= 1.1.2)", - "tune (>= 1.1.2)", - "vctrs (>= 0.4.1)", - "withr", - "workflows (>= 1.1.4)", - "yardstick (>= 1.3.0)" - ], - "Suggests": [ - "betacal", - "covr", - "knitr", - "MASS", - "mgcv", - "modeldata (>= 1.1.0)", - "nnet", - "parsnip (>= 1.2.0)", - "quantregForest", - "randomForest", - "recipes", - "rmarkdown", - "rsample", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "ByteCompile": "true", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "Collate": "'bound_prediction.R' 'cal-apply-binary.R' 'cal-apply-impl.R' 'cal-apply-multi.R' 'cal-apply-regression.R' 'cal-apply.R' 'cal-estimate-beta.R' 'cal-estimate-isotonic.R' 'cal-estimate-linear.R' 'cal-estimate-logistic.R' 'cal-estimate-multinom.R' 'cal-estimate-utils.R' 'cal-estimate-none.R' 'cal-pkg-check.R' 'cal-plot-breaks.R' 'cal-plot-logistic.R' 'cal-plot-regression.R' 'cal-plot-utils.R' 'cal-plot-windowed.R' 'cal-utils.R' 'cal-validate.R' 'class-pred.R' 'conformal_infer.R' 'conformal_infer_cv.R' 'conformal_infer_quantile.R' 'conformal_infer_split.R' 'data.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'make_class_pred.R' 'printing.R' 'probably-package.R' 'reexports.R' 'threshold_perf.R' 'utils.R' 'vctrs-compat.R' 'zzz.R'", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre], Davis Vaughan [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Max Kuhn ", - "Repository": "CRAN" - }, "processx": { "Package": "processx", "Version": "3.8.6", @@ -5470,46 +3820,6 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, - "prodlim": { - "Package": "prodlim", - "Version": "2025.04.28", - "Source": "Repository", - "Title": "Product-Limit Estimation for Censored Event History Analysis", - "Authors@R": "person(given = c(\"Thomas\", \"A.\"), family = \"Gerds\", role = c(\"aut\", \"cre\"), email = \"tag@biostat.ku.dk\")", - "Description": "Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. 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Gerds [aut, cre]", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, "progress": { "Package": "progress", "Version": "1.2.3", @@ -5543,54 +3853,6 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, - "progressr": { - "Package": "progressr", - "Version": "0.15.1", - "Source": "Repository", - "Title": "An Inclusive, Unifying API for Progress Updates", - "Description": "A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will also work with parallel processing via the 'future' framework, e.g. future.apply::future_lapply(), furrr::future_map(), and 'foreach' with 'doFuture'. The package is compatible with Shiny applications.", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))", - "License": "GPL (>= 3)", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "digest", - "utils" - ], - "Suggests": [ - "graphics", - "tcltk", - "beepr", - "cli", - "crayon", - "pbmcapply", - "progress", - "purrr", - "foreach", - "plyr", - "doFuture", - "future", - "future.apply", - "furrr", - "ntfy", - "RPushbullet", - "rstudioapi", - "shiny", - "commonmark", - "base64enc", - "tools" - ], - "VignetteBuilder": "progressr", - "URL": "https://progressr.futureverse.org, https://github.com/futureverse/progressr", - "BugReports": "https://github.com/futureverse/progressr/issues", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph] ()", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, "promises": { "Package": "promises", "Version": "1.3.3", @@ -5636,110 +3898,6 @@ "Maintainer": "Joe Cheng ", "Repository": "CRAN" }, - "proxy": { - "Package": "proxy", - "Version": "0.4-27", - "Source": "Repository", - "Type": "Package", - "Title": "Distance and Similarity Measures", - "Authors@R": "c(person(given = \"David\", family = \"Meyer\", role = c(\"aut\", \"cre\"), email = \"David.Meyer@R-project.org\"), person(given = \"Christian\", family = \"Buchta\", role = \"aut\"))", - "Description": "Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.", - "Depends": [ - "R (>= 3.4.0)" - ], - "Imports": [ - "stats", - "utils" - ], - "Suggests": [ - "cba" - ], - "Collate": "registry.R database.R dist.R similarities.R dissimilarities.R util.R seal.R", - "License": "GPL-2", - "NeedsCompilation": "yes", - "Author": "David Meyer [aut, cre], Christian Buchta [aut]", - "Maintainer": "David Meyer ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "proxyC": { - "Package": "proxyC", - "Version": "0.5.2", - "Source": "Repository", - "Type": "Package", - "Title": "Computes Proximity in Large Sparse Matrices", - "Authors@R": "c( person(\"Kohei\", \"Watanabe\", email = \"watanabe.kohei@gmail.com\", role = c(\"cre\", \"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-6519-5265\")), person(\"Robrecht\", \"Cannoodt\", email = \"rcannood@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-3641-729X\")) )", - "Description": "Computes proximity between rows or columns of large matrices efficiently in C++. Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries. Among various built-in similarity/distance measures, computation of correlation, cosine similarity, Dice coefficient and Euclidean distance is particularly fast.", - "URL": "https://github.com/koheiw/proxyC, https://koheiw.github.io/proxyC/", - "BugReports": "https://github.com/koheiw/proxyC/issues", - "License": "GPL-3", - "Depends": [ - "R (>= 3.1.0)", - "methods" - ], - "Imports": [ - "Matrix (>= 1.2)", - "Rcpp (>= 0.12.12)" - ], - "Suggests": [ - "testthat", - "entropy", - "proxy", - "knitr", - "rmarkdown" - ], - "LinkingTo": [ - "Rcpp", - "RcppArmadillo (>= 0.7.600.1.0)" - ], - "NeedsCompilation": "yes", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "VignetteBuilder": "knitr", - "Config/Needs/website": "coop, Rfast, parallelDist, distances, proxy, microbenchmark, ggplot2", - "Author": "Kohei Watanabe [cre, aut, cph] (), Robrecht Cannoodt [aut] ()", - "Maintainer": "Kohei Watanabe ", - "Repository": "CRAN" - }, - "ps": { - "Package": "ps", - "Version": "1.9.1", - "Source": "Repository", - "Title": "List, Query, Manipulate System Processes", - "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", - "BugReports": "https://github.com/r-lib/ps/issues", - "Depends": [ - "R (>= 3.4)" - ], - "Imports": [ - "utils" - ], - "Suggests": [ - "callr", - "covr", - "curl", - "pillar", - "pingr", - "processx (>= 3.1.0)", - "R6", - "rlang", - "testthat (>= 3.0.0)", - "webfakes", - "withr" - ], - "Biarch": "true", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" - }, "purrr": { "Package": "purrr", "Version": "1.1.0", @@ -5789,233 +3947,43 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "qpdf": { - "Package": "qpdf", - "Version": "1.4.1", + "quantreg": { + "Package": "quantreg", + "Version": "6.1", "Source": "Repository", - "Type": "Package", - "Title": "Split, Combine and Compress PDF Files", - "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Ben\", \"Raymond\", role = \"ctb\"), person(\"Jay Berkenbilt\", role = \"cph\", comment = \"Author of libqpdf\"))", - "Description": "Content-preserving transformations transformations of PDF files such as split, combine, and compress. This package interfaces directly to the 'qpdf' C++ library and does not require any command line utilities. Note that 'qpdf' does not read actual content from PDF files: to extract text and data you need the 'pdftools' package.", - "License": "Apache License 2.0", - "URL": "https://docs.ropensci.org/qpdf/ https://ropensci.r-universe.dev/qpdf", - "BugReports": "https://github.com/ropensci/qpdf/issues", - "Encoding": "UTF-8", - "Imports": [ - "Rcpp", - "askpass", - "curl" - ], - "LinkingTo": [ - "Rcpp" - ], - "RoxygenNote": "7.2.1", - "Suggests": [ - "testthat" - ], - "SystemRequirements": "libjpeg", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Ben Raymond [ctb], Jay Berkenbilt [cph] (Author of libqpdf)", - "Maintainer": "Jeroen Ooms ", - "Repository": "CRAN" - }, - "qs": { - "Package": "qs", - "Version": "0.27.3", - "Source": "Repository", - "Type": "Package", - "Title": "Quick Serialization of R Objects", - "Date": "2025-3-7", - "Authors@R": "c( person(\"Travers\", \"Ching\", email = \"traversc@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Yann\", \"Collet\", role = c(\"ctb\", \"cph\"), comment = \"Yann Collet is the author of the bundled zstd, lz4 and xxHash code\"), person(\"Facebook, Inc.\", role = \"cph\", comment = \"Facebook is the copyright holder of the bundled zstd code\"), person(\"Reichardt\", \"Tino\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Skibinski\", \"Przemyslaw\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Mori\", \"Yuta\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Romain\", \"Francois\", role = c(\"ctb\", \"cph\"), comment = \"Derived example/tutorials for ALTREP structures\"), person(\"Francesc\", \"Alted\", role = c(\"ctb\", \"cph\"), comment = \"Shuffling routines derived from Blosc library\"), person(\"Bryce\", \"Chamberlain\", email = \"superchordate@gmail.com\", role = c(\"ctb\"), comment = \"qsavem and qload functions\"), person(\"Salim\", \"Brüggemann\", email = \"salim-b@pm.me\", role = c(\"ctb\"), comment = \"Contributing to documentation (ORCID:0000-0002-5329-5987)\"))", - "Maintainer": "Travers Ching ", - "Description": "Provides functions for quickly writing and reading any R object to and from disk.", - "License": "GPL-3", - "LazyData": "true", - "Biarch": "true", + "Title": "Quantile Regression", + "Description": "Estimation and inference methods for models for conditional quantile functions: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, and Koenker, R. et al. (2017) Handbook of Quantile Regression, CRC Press, .", + "Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"rkoenker@illinois.edu\"), person(\"Stephen\", \"Portnoy\", role = c(\"ctb\"), comment = \"Contributions to Censored QR code\", email = \"sportnoy@illinois.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"pin.ng@nau.edu\"), person(\"Blaise\", \"Melly\", role = c(\"ctb\"), comment = \"Contributions to preprocessing code\", email = \"mellyblaise@gmail.com\"), person(\"Achim\", \"Zeileis\", role = c(\"ctb\"), comment = \"Contributions to dynrq code essentially identical to his dynlm code\", email = \"Achim.Zeileis@uibk.ac.at\"), person(\"Philip\", \"Grosjean\", role = c(\"ctb\"), comment = \"Contributions to nlrq code\", email = \"phgrosjean@sciviews.org\"), person(\"Cleve\", \"Moler\", role = c(\"ctb\"), comment = \"author of several linpack routines\"), person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\"), person(\"Victor\", \"Chernozhukov\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Ivan\", \"Fernandez-Val\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"tweaks (src/chlfct.f, 'tiny','Large')\", ORCID = \"0000-0002-8685-9910\")), person(c(\"Brian\", \"D\"), \"Ripley\", role = c(\"trl\",\"ctb\"), comment = \"Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice\", email = \"ripley@stats.ox.ac.uk\"))", + "Maintainer": "Roger Koenker ", + "Repository": "CRAN", "Depends": [ - "R (>= 3.0.2)" + "R (>= 3.5)", + "stats", + "SparseM" ], "Imports": [ - "Rcpp", - "RApiSerialize (>= 0.1.4)", - "stringfish (>= 0.15.1)" - ], - "LinkingTo": [ - "Rcpp", - "RApiSerialize", - "stringfish", - "BH" - ], - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Suggests": [ - "knitr", - "rmarkdown", - "testthat", - "dplyr", - "data.table" - ], - "VignetteBuilder": "knitr", - "Copyright": "This package includes code from the 'zstd' library owned by Facebook, Inc. and created by Yann Collet; the 'lz4' library created and owned by Yann Collet; xxHash library created and owned by Yann Collet; and code derived from the 'Blosc' library created and owned by Francesc Alted.", - "URL": "https://github.com/qsbase/qs", - "BugReports": "https://github.com/qsbase/qs/issues", - "NeedsCompilation": "yes", - "Author": "Travers Ching [aut, cre, cph], Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd, lz4 and xxHash code), Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled zstd code), Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled code), Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd bundled code), Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled code), Romain Francois [ctb, cph] (Derived example/tutorials for ALTREP structures), Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc library), Bryce Chamberlain [ctb] (qsavem and qload functions), Salim Brüggemann [ctb] (Contributing to documentation (ORCID:0000-0002-5329-5987))", - "Repository": "CRAN" - }, - "qs2": { - "Package": "qs2", - "Version": "0.1.5", - "Source": "Repository", - "Type": "Package", - "Title": "Efficient Serialization of R Objects", - "Date": "2025-3-7", - "Authors@R": "c( person(\"Travers\", \"Ching\", email = \"traversc@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Yann\", \"Collet\", role = c(\"ctb\", \"cph\"), comment = \"Yann Collet is the author of the bundled zstd\"), person(\"Facebook, Inc.\", role = \"cph\", comment = \"Facebook is the copyright holder of the bundled zstd code\"), person(\"Reichardt\", \"Tino\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Skibinski\", \"Przemyslaw\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Mori\", \"Yuta\", role = c(\"ctb\", \"cph\"), comment = \"Contributor/copyright holder of zstd bundled code\"), person(\"Francesc\", \"Alted\", role = c(\"ctb\", \"cph\"), comment = \"Shuffling routines derived from Blosc library\"))", - "Maintainer": "Travers Ching ", - "Description": "Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.", - "License": "GPL-3", - "LazyData": "true", - "Biarch": "true", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "Rcpp", - "stringfish (>= 0.15.1)" - ], - "LinkingTo": [ - "Rcpp", - "stringfish", - "RcppParallel" - ], - "Suggests": [ - "knitr", - "rmarkdown", - "dplyr", - "data.table", - "stringi" - ], - "SystemRequirements": "GNU make", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "VignetteBuilder": "knitr", - "Copyright": "This package includes code from the 'zstd' library owned by Facebook, Inc. and created by Yann Collet; and code derived from the 'Blosc' library created and owned by Francesc Alted.", - "URL": "https://github.com/qsbase/qs2", - "BugReports": "https://github.com/qsbase/qs2/issues", - "NeedsCompilation": "yes", - "Author": "Travers Ching [aut, cre, cph], Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd), Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled zstd code), Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled code), Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd bundled code), Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled code), Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc library)", - "Repository": "CRAN" - }, - "quanteda": { - "Package": "quanteda", - "Version": "4.3.1", - "Source": "Repository", - "Title": "Quantitative Analysis of Textual Data", - "Description": "A fast, flexible, and comprehensive framework for quantitative text analysis in R. Provides functionality for corpus management, creating and manipulating tokens and n-grams, exploring keywords in context, forming and manipulating sparse matrices of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.", - "Authors@R": "c( person(\"Kenneth\", \"Benoit\", email = \"kbenoit@lse.ac.uk\", role = c(\"cre\", \"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-0797-564X\")), person(\"Kohei\", \"Watanabe\", email = \"watanabe.kohei@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-6519-5265\")), person(\"Haiyan\", \"Wang\", email = \"whyinsa@yahoo.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-4992-4311\")), person(\"Paul\", \"Nulty\", email = \"paul.nulty@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-7214-4666\")), person(\"Adam\", \"Obeng\", email = \"quanteda@binaryeagle.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2906-4775\")), person(\"Stefan\", \"Müller\", email = \"stefan.mueller@ucd.ie\", role = \"aut\", comment = c(ORCID = \"0000-0002-6315-4125\")), person(\"Akitaka\", \"Matsuo\", email = \"a.matsuo@essex.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0002-3323-6330\")), person(\"William\", \"Lowe\", email = \"lowe@hertie-school.org\", role = \"aut\", comment = c(ORCID = \"0000-0002-1549-6163\")), person(\"Christian\", \"Müller\", email = \"C.Mueller@lse.ac.uk\", role = \"ctb\"), person(\"Olivier\", \"Delmarcelle\", email = \"olivier.delmarcelle@ugent.be\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4347-070X\")), person(\"European Research Council\", role = \"fnd\", comment = \"ERC-2011-StG 283794-QUANTESS\") )", - "License": "GPL-3", - "Depends": [ - "R (>= 4.1.0)", - "methods" - ], - "Imports": [ - "fastmatch", - "jsonlite", - "lifecycle", - "magrittr", - "Matrix (>= 1.5-0)", - "Rcpp (>= 0.12.12)", - "SnowballC", - "stopwords", - "stringi", - "xml2", - "yaml" - ], - "LinkingTo": [ - "Rcpp" - ], - "NeedsCompilation": "yes", - "Suggests": [ - "rmarkdown", - "spelling", - "testthat", - "formatR", - "tm (>= 0.6)", - "knitr", - "lsa", - "rlang", - "slam" - ], - "Enhances": [ - "dplyr", - "lda", - "purrr", - "spacyr", - "stm", - "text2vec", - "tibble", - "tidytext", - "tokenizers", - "topicmodels" - ], - "URL": "https://quanteda.io", - "Encoding": "UTF-8", - "BugReports": "https://github.com/quanteda/quanteda/issues", - "LazyData": "TRUE", - "VignetteBuilder": "knitr", - "Language": "en-GB", - "RoxygenNote": "7.3.2", - "Collate": "'RcppExports.R' 'tokenizers.R' 'meta.R' 'quanteda-documentation.R' 'aaa.R' 'bootstrap_dfm.R' 'casechange-functions.R' 'char_select.R' 'convert.R' 'corpus-addsummary-metadata.R' 'corpus-methods.R' 'corpus.R' 'corpus_chunk.R' 'corpus_group.R' 'corpus_reshape.R' 'corpus_sample.R' 'corpus_segment.R' 'corpus_subset.R' 'corpus_trim.R' 'data-documentation.R' 'dfm-classes.R' 'dfm-methods.R' 'dfm-print.R' 'dfm-subsetting.R' 'dfm.R' 'dfm_compress.R' 'dfm_group.R' 'dfm_lookup.R' 'dfm_match.R' 'dfm_replace.R' 'dfm_sample.R' 'dfm_select.R' 'dfm_sort.R' 'dfm_subset.R' 'dfm_trim.R' 'dfm_weight.R' 'dictionaries.R' 'dimnames.R' 'fcm-classes.R' 'docnames.R' 'docvars.R' 'fcm-methods.R' 'fcm-print.R' 'fcm-subsetting.R' 'fcm.R' 'fcm_select.R' 'index.R' 'kwic.R' 'message.R' 'nfunctions.R' 'object-builder.R' 'object2fixed.R' 'pattern2fixed.R' 'phrases.R' 'quanteda-package.R' 'quanteda_options.R' 'spacyr-methods.R' 'stopwords.R' 'summary.R' 'textmodel.R' 'textplot.R' 'texts.R' 'textstat.R' 'tokens-methods.R' 'tokens.R' 'tokens_chunk.R' 'tokens_compound.R' 'tokens_group.R' 'tokens_lookup.R' 'tokens_ngrams.R' 'tokens_replace.R' 'tokens_restore.R' 'tokens_sample.R' 'tokens_segment.R' 'tokens_select.R' 'tokens_split.R' 'tokens_subset.R' 'tokens_trim.R' 'tokens_xptr.R' 'utils.R' 'validator.R' 'wordstem.R' 'zzz.R'", - "Author": "Kenneth Benoit [cre, aut, cph] (ORCID: ), Kohei Watanabe [aut] (ORCID: ), Haiyan Wang [aut] (ORCID: ), Paul Nulty [aut] (ORCID: ), Adam Obeng [aut] (ORCID: ), Stefan Müller [aut] (ORCID: ), Akitaka Matsuo [aut] (ORCID: ), William Lowe [aut] (ORCID: ), Christian Müller [ctb], Olivier Delmarcelle [ctb] (ORCID: ), European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)", - "Maintainer": "Kenneth Benoit ", - "Repository": "CRAN" - }, - "quanteda.textstats": { - "Package": "quanteda.textstats", - "Version": "0.97.2", - "Source": "Repository", - "Title": "Textual Statistics for the Quantitative Analysis of Textual Data", - "Description": "Textual statistics functions formerly in the 'quanteda' package. Textual statistics for characterizing and comparing textual data. Includes functions for measuring term and document frequency, the co-occurrence of words, similarity and distance between features and documents, feature entropy, keyword occurrence, readability, and lexical diversity. These functions extend the 'quanteda' package and are specially designed for sparse textual data.", - "Authors@R": "c( person(\"Kenneth\", \"Benoit\", email = \"kbenoit@lse.ac.uk\", role = c(\"cre\", \"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-0797-564X\")), person(\"Kohei\", \"Watanabe\", email = \"watanabe.kohei@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-6519-5265\")), person(\"Haiyan\", \"Wang\", email = \"whyinsa@yahoo.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-4992-4311\")), person(\"Jiong Wei\", \"Lua\", email = \"J.W.Lua@lse.ac.uk\", role = \"aut\"), person(\"Jouni\", \"Kuha\", email = \"j.kuha@lse.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0002-1156-8465\")), person(\"European Research Council\", role = \"fnd\", comment = \"ERC-2011-StG 283794-QUANTESS\") )", - "License": "GPL-3", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "quanteda (>= 4.0.0)", - "Matrix (>= 1.5-0)", "methods", - "nsyllable", - "proxyC (>= 0.1.4)", - "Rcpp (>= 0.12.12)", - "stringi" - ], - "LinkingTo": [ - "Rcpp", - "RcppArmadillo (>= 0.7.600.1.0)", - "quanteda" + "graphics", + "Matrix", + "MatrixModels", + "survival", + "MASS" ], "Suggests": [ - "entropy", - "ExPosition", - "proxy", - "rmarkdown", - "spelling", - "svs", - "testthat", - "knitr", - "covr" + "interp", + "rgl", + "logspline", + "nor1mix", + "Formula", + "zoo", + "R.rsp", + "conquer" ], - "URL": "https://quanteda.io", - "Encoding": "UTF-8", - "BugReports": "https://github.com/quanteda/quanteda.textstats/issues", - "LazyData": "TRUE", - "Language": "en-GB", - "RoxygenNote": "7.3.2", + "License": "GPL (>= 2)", + "URL": "https://www.r-project.org", "NeedsCompilation": "yes", - "Author": "Kenneth Benoit [cre, aut, cph] (), Kohei Watanabe [aut] (), Haiyan Wang [aut] (), Jiong Wei Lua [aut], Jouni Kuha [aut] (), European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)", - "Maintainer": "Kenneth Benoit ", - "Repository": "CRAN" + "VignetteBuilder": "R.rsp", + "Author": "Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Blaise Melly [ctb] (Contributions to preprocessing code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Cleve Moler [ctb] (author of several linpack routines), Yousef Saad [ctb] (author of sparskit2), Victor Chernozhukov [ctb] (contributions to extreme value inference code), Ivan Fernandez-Val [ctb] (contributions to extreme value inference code), Martin Maechler [ctb] (tweaks (src/chlfct.f, 'tiny','Large'), ), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)" }, "ragg": { "Package": "ragg", @@ -6053,29 +4021,6 @@ "Author": "Thomas Lin Pedersen [cre, aut] (), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]", "Repository": "CRAN" }, - "randomForest": { - "Package": "randomForest", - "Version": "4.7-1.2", - "Source": "Repository", - "Title": "Breiman and Cutlers Random Forests for Classification and Regression", - "Date": "2022-01-24", - "Depends": [ - "R (>= 4.1.0)", - "stats" - ], - "Suggests": [ - "RColorBrewer", - "MASS" - ], - "Authors@R": "c(person(\"Leo\", \"Breiman\", role = \"aut\", comment = \"Fortran original\"), person(\"Adele\", \"Cutler\", role = \"aut\", comment = \"Fortran original\"), person(\"Andy\", \"Liaw\", role = c(\"aut\", \"cre\"), email = \"andy_liaw@merck.com\", comment = \"R port\"), person(\"Matthew\", \"Wiener\", role = \"aut\", comment = \"R port\"))", - "Description": "Classification and regression based on a forest of trees using random inputs, based on Breiman (2001) .", - "License": "GPL (>= 2)", - "URL": "https://www.stat.berkeley.edu/~breiman/RandomForests/", - "NeedsCompilation": "yes", - "Repository": "CRAN", - "Author": "Leo Breiman [aut] (Fortran original), Adele Cutler [aut] (Fortran original), Andy Liaw [aut, cre] (R port), Matthew Wiener [aut] (R port)", - "Maintainer": "Andy Liaw " - }, "rappdirs": { "Package": "rappdirs", "Version": "0.3.3", @@ -6105,50 +4050,80 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "rcrossref": { - "Package": "rcrossref", - "Version": "1.2.0", + "reactR": { + "Package": "reactR", + "Version": "0.6.1", "Source": "Repository", - "Title": "Client for Various 'CrossRef' 'APIs'", - "Description": "Client for various 'CrossRef' 'APIs', including 'metadata' search with their old and newer search 'APIs', get 'citations' in various formats (including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs' to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to full text of articles when available.", + "Type": "Package", + "Title": "React Helpers", + "Date": "2024-09-14", + "Authors@R": "c( person( \"Facebook\", \"Inc\" , role = c(\"aut\", \"cph\") , comment = \"React library in lib, https://reactjs.org/; see AUTHORS for full list of contributors\" ), person( \"Michel\",\"Weststrate\", , role = c(\"aut\", \"cph\") , comment = \"mobx library in lib, https://github.com/mobxjs\" ), person( \"Kent\", \"Russell\" , role = c(\"aut\", \"cre\") , comment = \"R interface\" , email = \"kent.russell@timelyportfolio.com\" ), person( \"Alan\", \"Dipert\" , role = c(\"aut\") , comment = \"R interface\" , email = \"alan@rstudio.com\" ), person( \"Greg\", \"Lin\" , role = c(\"aut\") , comment = \"R interface\" , email = \"glin@glin.io\" ) )", + "Maintainer": "Kent Russell ", + "Description": "Make it easy to use 'React' in R with 'htmlwidget' scaffolds, helper dependency functions, an embedded 'Babel' 'transpiler', and examples.", + "URL": "https://github.com/react-R/reactR", + "BugReports": "https://github.com/react-R/reactR/issues", "License": "MIT + file LICENSE", - "Authors@R": "c( person(\"Scott\", \"Chamberlain\", role = \"aut\"), person(\"Hao\", \"Zhu\", role = \"aut\"), person(\"Najko\", \"Jahn\", role = c(\"aut\", \"cre\"), email = \"najko.jahn@gmail.com\", comment = c(ORCID = \"0000-0001-5105-1463\")), person(\"Carl\", \"Boettiger\", role = \"aut\"), person(\"Karthik\", \"Ram\", role = \"aut\") )", - "URL": "https://docs.ropensci.org/rcrossref/, https://github.com/ropensci/rcrossref", - "BugReports": "https://github.com/ropensci/rcrossref/issues", "Encoding": "UTF-8", - "Language": "en-US", "Imports": [ - "methods", - "utils", - "jsonlite (>= 1.5)", - "crul (>= 0.7.4)", - "xml2 (>= 1.1.1)", - "plyr", - "dplyr (>= 0.7.4)", - "tibble", - "R6", - "shiny", - "miniUI", - "stringr", - "DT", - "stats" + "htmltools" ], "Suggests": [ - "roxygen2 (>= 7.1.0)", - "testthat", - "knitr", + "htmlwidgets (>= 1.5.3)", "rmarkdown", - "vcr (>= 0.2.6)", - "bibtex", - "withr" + "shiny", + "V8", + "knitr", + "usethis", + "jsonlite" ], - "RoxygenNote": "7.2.0", - "X-schema.org-applicationCategory": "Literature", - "X-schema.org-keywords": "text-ming, literature, pdf, xml, publications, citations, full-text, TDM, Crossref", - "X-schema.org-isPartOf": "https://ropensci.org", + "RoxygenNote": "7.3.2", + "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Scott Chamberlain [aut], Hao Zhu [aut], Najko Jahn [aut, cre] (), Carl Boettiger [aut], Karthik Ram [aut]", - "Maintainer": "Najko Jahn ", + "Author": "Facebook Inc [aut, cph] (React library in lib, https://reactjs.org/; see AUTHORS for full list of contributors), Michel Weststrate [aut, cph] (mobx library in lib, https://github.com/mobxjs), Kent Russell [aut, cre] (R interface), Alan Dipert [aut] (R interface), Greg Lin [aut] (R interface)", + "Repository": "CRAN" + }, + "reactable": { + "Package": "reactable", + "Version": "0.4.4", + "Source": "Repository", + "Type": "Package", + "Title": "Interactive Data Tables for R", + "Authors@R": "c( person(\"Greg\", \"Lin\", email = \"glin@glin.io\", role = c(\"aut\", \"cre\")), person(\"Tanner\", \"Linsley\", role = c(\"ctb\", \"cph\"), comment = \"React Table library\"), person(family = \"Emotion team and other contributors\", role = c(\"ctb\", \"cph\"), comment = \"Emotion library\"), person(\"Kent\", \"Russell\", role = c(\"ctb\", \"cph\"), comment = \"reactR package\"), person(\"Ramnath\", \"Vaidyanathan\", role = c(\"ctb\", \"cph\"), comment = \"htmlwidgets package\"), person(\"Joe\", \"Cheng\", role = c(\"ctb\", \"cph\"), comment = \"htmlwidgets package\"), person(\"JJ\", \"Allaire\", role = c(\"ctb\", \"cph\"), comment = \"htmlwidgets package\"), person(\"Yihui\", \"Xie\", role = c(\"ctb\", \"cph\"), comment = \"htmlwidgets package\"), person(\"Kenton\", \"Russell\", role = c(\"ctb\", \"cph\"), comment = \"htmlwidgets package\"), person(family = \"Facebook, Inc. and its affiliates\", role = c(\"ctb\", \"cph\"), comment = \"React library\"), person(family = \"FormatJS\", role = c(\"ctb\", \"cph\"), comment = \"FormatJS libraries\"), person(family = \"Feross Aboukhadijeh, and other contributors\", role = c(\"ctb\", \"cph\"), comment = \"buffer library\"), person(\"Roman\", \"Shtylman\", role = c(\"ctb\", \"cph\"), comment = \"process library\"), person(\"James\", \"Halliday\", role = c(\"ctb\", \"cph\"), comment = \"stream-browserify library\"), person(family = \"Posit Software, PBC\", role = c(\"fnd\", \"cph\")) )", + "Description": "Interactive data tables for R, based on the 'React Table' JavaScript library. Provides an HTML widget that can be used in 'R Markdown' or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.", + "License": "MIT + file LICENSE", + "URL": "https://glin.github.io/reactable/, https://github.com/glin/reactable", + "BugReports": "https://github.com/glin/reactable/issues", + "Depends": [ + "R (>= 3.1)" + ], + "Imports": [ + "digest", + "htmltools (>= 0.5.2)", + "htmlwidgets (>= 1.5.3)", + "jsonlite", + "reactR" + ], + "Suggests": [ + "covr", + "crosstalk", + "dplyr", + "fontawesome", + "knitr", + "leaflet", + "MASS", + "rmarkdown", + "shiny", + "sparkline", + "testthat", + "tippy", + "V8" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Greg Lin [aut, cre], Tanner Linsley [ctb, cph] (React Table library), Emotion team and other contributors [ctb, cph] (Emotion library), Kent Russell [ctb, cph] (reactR package), Ramnath Vaidyanathan [ctb, cph] (htmlwidgets package), Joe Cheng [ctb, cph] (htmlwidgets package), JJ Allaire [ctb, cph] (htmlwidgets package), Yihui Xie [ctb, cph] (htmlwidgets package), Kenton Russell [ctb, cph] (htmlwidgets package), Facebook, Inc. and its affiliates [ctb, cph] (React library), FormatJS [ctb, cph] (FormatJS libraries), Feross Aboukhadijeh, and other contributors [ctb, cph] (buffer library), Roman Shtylman [ctb, cph] (process library), James Halliday [ctb, cph] (stream-browserify library), Posit Software, PBC [fnd, cph]", + "Maintainer": "Greg Lin ", "Repository": "CRAN" }, "readr": { @@ -6247,98 +4222,6 @@ "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, - "recipes": { - "Package": "recipes", - "Version": "1.3.1", - "Source": "Repository", - "Title": "Preprocessing and Feature Engineering Steps for Modeling", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "A recipe prepares your data for modeling. We provide an extensible framework for pipeable sequences of feature engineering steps provides preprocessing tools to be applied to data. Statistical parameters for the steps can be estimated from an initial data set and then applied to other data sets. The resulting processed output can then be used as inputs for statistical or machine learning models.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/recipes, https://recipes.tidymodels.org/", - "BugReports": "https://github.com/tidymodels/recipes/issues", - "Depends": [ - "dplyr (>= 1.1.0)", - "R (>= 4.1)" - ], - "Imports": [ - "cli", - "clock (>= 0.6.1)", - "generics (>= 0.1.2)", - "glue", - "gower", - "hardhat (>= 1.4.1)", - "ipred (>= 0.9-12)", - "lifecycle (>= 1.0.3)", - "lubridate (>= 1.8.0)", - "magrittr", - "Matrix", - "purrr (>= 1.0.0)", - "rlang (>= 1.1.0)", - "sparsevctrs (>= 0.3.3)", - "stats", - "tibble", - "tidyr (>= 1.0.0)", - "tidyselect (>= 1.2.0)", - "timeDate", - "utils", - "vctrs (>= 0.5.0)", - "withr" - ], - "Suggests": [ - "covr", - "ddalpha", - "dials (>= 1.2.0)", - "ggplot2", - "igraph", - "kernlab", - "knitr", - "methods", - "modeldata (>= 0.1.1)", - "parsnip (>= 1.2.0)", - "RANN", - "RcppRoll", - "rmarkdown", - "rpart", - "rsample", - "RSpectra", - "splines2", - "testthat (>= 3.0.0)", - "workflows", - "xml2" - ], - "VignetteBuilder": "knitr", - "RdMacros": "lifecycle", - "Config/Needs/website": "tidyverse/tidytemplate, rmarkdown", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2025-04-23", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre], Hadley Wickham [aut], Emil Hvitfeldt [aut], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Max Kuhn ", - "Repository": "RSPM" - }, - "rematch": { - "Package": "rematch", - "Version": "2.0.0", - "Source": "Repository", - "Title": "Match Regular Expressions with a Nicer 'API'", - "Author": "Gabor Csardi", - "Maintainer": "Gabor Csardi ", - "Description": "A small wrapper on 'regexpr' to extract the matches and captured groups from the match of a regular expression to a character vector.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/gaborcsardi/rematch", - "BugReports": "https://github.com/gaborcsardi/rematch/issues", - "RoxygenNote": "5.0.1.9000", - "Suggests": [ - "covr", - "testthat" - ], - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, "rematch2": { "Package": "rematch2", "Version": "2.1.2", @@ -6364,9 +4247,56 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, + "remotes": { + "Package": "remotes", + "Version": "2.5.0", + "Source": "Repository", + "Title": "R Package Installation from Remote Repositories, Including 'GitHub'", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )", + "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories. This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.", + "License": "MIT + file LICENSE", + "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme", + "BugReports": "https://github.com/r-lib/remotes/issues", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ + "methods", + "stats", + "tools", + "utils" + ], + "Suggests": [ + "brew", + "callr", + "codetools", + "covr", + "curl", + "git2r (>= 0.23.0)", + "knitr", + "mockery", + "pingr", + "pkgbuild (>= 1.0.1)", + "rmarkdown", + "rprojroot", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "SystemRequirements": "Subversion for install_svn, git for install_git", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, "renv": { "Package": "renv", - "Version": "1.1.4", + "Version": "1.1.5", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -6385,6 +4315,7 @@ "covr", "cpp11", "devtools", + "generics", "gitcreds", "jsonlite", "jsonvalidate", @@ -6413,7 +4344,7 @@ "Config/testthat/parallel": "true", "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes", "NeedsCompilation": "no", - "Author": "Kevin Ushey [aut, cre] (), Hadley Wickham [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Kevin Ushey [aut, cre] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Kevin Ushey ", "Repository": "CRAN" }, @@ -6515,39 +4446,6 @@ "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, - "reshape2": { - "Package": "reshape2", - "Version": "1.4.4", - "Source": "Repository", - "Title": "Flexibly Reshape Data: A Reboot of the Reshape Package", - "Author": "Hadley Wickham ", - "Maintainer": "Hadley Wickham ", - "Description": "Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').", - "License": "MIT + file LICENSE", - "URL": "https://github.com/hadley/reshape", - "BugReports": "https://github.com/hadley/reshape/issues", - "Depends": [ - "R (>= 3.1)" - ], - "Imports": [ - "plyr (>= 1.8.1)", - "Rcpp", - "stringr" - ], - "Suggests": [ - "covr", - "lattice", - "testthat (>= 0.8.0)" - ], - "LinkingTo": [ - "Rcpp" - ], - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.1.0", - "NeedsCompilation": "yes", - "Repository": "CRAN" - }, "rlang": { "Package": "rlang", "Version": "1.1.6", @@ -6601,7 +4499,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.29", + "Version": "2.30", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -6651,115 +4549,10 @@ "RoxygenNote": "7.3.2", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", - "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (), Christophe Dervieux [aut] (), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (), Andrew Dunning [ctb] (), Atsushi Yasumoto [ctb, cph] (, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (), Devon Ryan [ctb] (), Frederik Aust [ctb] (), Jeff Allen [ctb], JooYoung Seo [ctb] (), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", + "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "rpart": { - "Package": "rpart", - "Version": "4.1.24", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-01-06", - "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", - "Description": "Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.", - "Title": "Recursive Partitioning and Regression Trees", - "Depends": [ - "R (>= 2.15.0)", - "graphics", - "stats", - "grDevices" - ], - "Suggests": [ - "survival" - ], - "License": "GPL-2 | GPL-3", - "LazyData": "yes", - "ByteCompile": "yes", - "NeedsCompilation": "yes", - "Author": "Terry Therneau [aut], Beth Atkinson [aut, cre], Brian Ripley [trl] (producer of the initial R port, maintainer 1999-2017)", - "Maintainer": "Beth Atkinson ", - "Repository": "CRAN", - "URL": "https://github.com/bethatkinson/rpart, https://cran.r-project.org/package=rpart", - "BugReports": "https://github.com/bethatkinson/rpart/issues" - }, - "rpart.plot": { - "Package": "rpart.plot", - "Version": "3.1.3", - "Source": "Repository", - "Title": "Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'", - "Authors@R": "person (given = \"Stephen\", family = \"Milborrow\", role = c(\"aut\", \"cre\"), email = \"milbo@sonic.net\")", - "Author": "Stephen Milborrow [aut, cre]", - "Maintainer": "Stephen Milborrow ", - "Depends": [ - "R (>= 3.4.0)", - "rpart (>= 4.1-15)" - ], - "Suggests": [ - "earth (>= 5.1.2)" - ], - "Description": "Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the 'rpart' package.", - "License": "GPL-3", - "LazyData": "yes", - "URL": "http://www.milbo.org/rpart-plot/index.html", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, - "rsample": { - "Package": "rsample", - "Version": "1.3.0", - "Source": "Repository", - "Title": "General Resampling Infrastructure", - "Authors@R": "c( person(\"Hannah\", \"Frick\", , \"hannah@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6049-5258\")), person(\"Fanny\", \"Chow\", , \"fannybchow@gmail.com\", role = \"aut\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Michael\", \"Mahoney\", , \"mike.mahoney.218@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-2402-304X\")), person(\"Julia\", \"Silge\", , \"julia.silge@posit.co\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-3671-836X\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Classes and functions to create and summarize different types of resampling objects (e.g. bootstrap, cross-validation).", - "License": "MIT + file LICENSE", - "URL": "https://rsample.tidymodels.org, https://github.com/tidymodels/rsample", - "BugReports": "https://github.com/tidymodels/rsample/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "cli", - "dplyr (>= 1.1.1)", - "furrr", - "generics", - "glue", - "lifecycle", - "methods", - "pillar", - "purrr (>= 1.0.0)", - "rlang (>= 1.1.0)", - "slider (>= 0.1.5)", - "tibble", - "tidyr", - "tidyselect", - "vctrs (>= 0.5.0)" - ], - "Suggests": [ - "broom", - "covr", - "ggplot2", - "knitr", - "modeldata", - "recipes (>= 0.1.4)", - "rmarkdown", - "stats", - "testthat (>= 3.0.0)", - "utils", - "whisker", - "withr", - "xml2" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "GGally, nlstools, tidymodels, tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "Hannah Frick [aut, cre] (), Fanny Chow [aut], Max Kuhn [aut], Michael Mahoney [aut] (), Julia Silge [aut] (), Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Hannah Frick ", - "Repository": "RSPM" - }, "rstudioapi": { "Package": "rstudioapi", "Version": "0.17.1", @@ -6834,6 +4627,48 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, + "sandwich": { + "Package": "sandwich", + "Version": "3.1-1", + "Source": "Repository", + "Date": "2024-09-16", + "Title": "Robust Covariance Matrix Estimators", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Thomas\", family = \"Lumley\", role = \"aut\", email = \"t.lumley@auckland.ac.nz\", comment = c(ORCID = \"0000-0003-4255-5437\")), person(given = \"Nathaniel\", family = \"Graham\", role = \"ctb\", email = \"npgraham1@gmail.com\", comment = c(ORCID = \"0009-0002-1215-5256\")), person(given = \"Susanne\", family = \"Koell\", role = \"ctb\"))", + "Description": "Object-oriented software for model-robust covariance matrix estimators. Starting out from the basic robust Eicker-Huber-White sandwich covariance methods include: heteroscedasticity-consistent (HC) covariances for cross-section data; heteroscedasticity- and autocorrelation-consistent (HAC) covariances for time series data (such as Andrews' kernel HAC, Newey-West, and WEAVE estimators); clustered covariances (one-way and multi-way); panel and panel-corrected covariances; outer-product-of-gradients covariances; and (clustered) bootstrap covariances. All methods are applicable to (generalized) linear model objects fitted by lm() and glm() but can also be adapted to other classes through S3 methods. Details can be found in Zeileis et al. (2020) , Zeileis (2004) and Zeileis (2006) .", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ + "stats", + "utils", + "zoo" + ], + "Suggests": [ + "AER", + "car", + "geepack", + "lattice", + "lme4", + "lmtest", + "MASS", + "multiwayvcov", + "parallel", + "pcse", + "plm", + "pscl", + "scatterplot3d", + "stats4", + "strucchange", + "survival" + ], + "License": "GPL-2 | GPL-3", + "URL": "https://sandwich.R-Forge.R-project.org/", + "BugReports": "https://sandwich.R-Forge.R-project.org/contact.html", + "NeedsCompilation": "no", + "Author": "Achim Zeileis [aut, cre] (), Thomas Lumley [aut] (), Nathaniel Graham [ctb] (), Susanne Koell [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" + }, "sass": { "Package": "sass", "Version": "0.4.10", @@ -6914,6 +4749,27 @@ "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, + "segmented": { + "Package": "segmented", + "Version": "2.1-4", + "Source": "Repository", + "Type": "Package", + "Title": "Regression Models with Break-Points / Change-Points Estimation (with Possibly Random Effects)", + "Date": "2025-02-26", + "Authors@R": "c(person(given = c(\"Vito\",\"M.\",\"R.\"), family = \"Muggeo\", role = c(\"aut\", \"cre\"), email = \"vito.muggeo@unipa.it\", comment=c(ORCID=\"0000-0002-3386-4054\")))", + "Maintainer": "Vito M. R. Muggeo ", + "Description": "Fitting regression models where, in addition to possible linear terms, one or more covariates have segmented (i.e., broken-line or piece-wise linear) or stepmented (i.e. piece-wise constant) effects. Multiple breakpoints for the same variable are allowed. The estimation method is discussed in Muggeo (2003, ) and illustrated in Muggeo (2008, ). An approach for hypothesis testing is presented in Muggeo (2016, ), and interval estimation for the breakpoint is discussed in Muggeo (2017, ). Segmented mixed models, i.e. random effects in the change point, are discussed in Muggeo (2014, ). Estimation of piecewise-constant relationships and changepoints (mean-shift models) is discussed in Fasola et al. (2018, ).", + "Depends": [ + "R (>= 3.5.0)", + "MASS", + "nlme" + ], + "License": "GPL", + "NeedsCompilation": "no", + "Author": "Vito M. R. Muggeo [aut, cre] ()", + "RoxygenNote": "7.3.1", + "Repository": "CRAN" + }, "selectr": { "Package": "selectr", "Version": "0.4-2", @@ -6993,128 +4849,6 @@ "Author": "Andree Valle Campos [aut, cre] (ORCID: )", "Maintainer": "Andree Valle Campos " }, - "sfd": { - "Package": "sfd", - "Version": "0.1.0", - "Source": "Repository", - "Title": "Space-Filling Design Library", - "Authors@R": "person(\"Max\", \"Kuhn\", , \"mxkuhn@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2402-136X\"))", - "Description": "A collection of pre-optimized space-filling designs, for up to ten parameters, is contained here. Functions are provided to access designs described by Husslage et al (2011) and Wang and Fang (2005) . The design types included are Audze-Eglais, MaxiMin, and uniform.", - "License": "MIT + file LICENSE", - "Depends": [ - "R (>= 2.10)", - "tibble" - ], - "Imports": [ - "cli", - "rlang" - ], - "Suggests": [ - "ggplot2", - "spelling", - "testthat (>= 3.0.0)" - ], - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "Language": "en-US", - "LazyData": "true", - "RoxygenNote": "7.2.3.9000", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre] ()", - "Maintainer": "Max Kuhn ", - "Repository": "RSPM" - }, - "shape": { - "Package": "shape", - "Version": "1.4.6.1", - "Source": "Repository", - "Title": "Functions for Plotting Graphical Shapes, Colors", - "Author": "Karline Soetaert ", - "Maintainer": "Karline Soetaert ", - "Depends": [ - "R (>= 2.01)" - ], - "Imports": [ - "stats", - "graphics", - "grDevices" - ], - "Description": "Functions for plotting graphical shapes such as ellipses, circles, cylinders, arrows, ...", - "License": "GPL (>= 3)", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "shiny": { - "Package": "shiny", - "Version": "1.11.1", - "Source": "Repository", - "Type": "Package", - "Title": "Web Application Framework for R", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"), person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(family = \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(given = \"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", - "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.", - "License": "GPL-3 | file LICENSE", - "Depends": [ - "R (>= 3.0.2)", - "methods" - ], - "Imports": [ - "utils", - "grDevices", - "httpuv (>= 1.5.2)", - "mime (>= 0.3)", - "jsonlite (>= 0.9.16)", - "xtable", - "fontawesome (>= 0.4.0)", - "htmltools (>= 0.5.4)", - "R6 (>= 2.0)", - "sourcetools", - "later (>= 1.0.0)", - "promises (>= 1.3.2)", - "tools", - "cli", - "rlang (>= 0.4.10)", - "fastmap (>= 1.1.1)", - "withr", - "commonmark (>= 1.7)", - "glue (>= 1.3.2)", - "bslib (>= 0.6.0)", - "cachem (>= 1.1.0)", - "lifecycle (>= 0.2.0)" - ], - "Suggests": [ - "coro (>= 1.1.0)", - "datasets", - "DT", - "Cairo (>= 1.5-5)", - "testthat (>= 3.2.1)", - "knitr (>= 1.6)", - "markdown", - "rmarkdown", - "ggplot2", - "reactlog (>= 1.0.0)", - "magrittr", - "yaml", - "mirai", - "future", - "dygraphs", - "ragg", - "showtext", - "sass", - "watcher" - ], - "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", - "BugReports": "https://github.com/rstudio/shiny/issues", - "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'", - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "Config/testthat/edition": "3", - "Config/Needs/check": "shinytest2", - "NeedsCompilation": "no", - "Author": "Winston Chang [aut, cre] (ORCID: ), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", - "Maintainer": "Winston Chang ", - "Repository": "CRAN" - }, "skimr": { "Package": "skimr", "Version": "2.2.1", @@ -7163,144 +4897,28 @@ "Maintainer": "Elin Waring ", "Repository": "CRAN" }, - "slider": { - "Package": "slider", - "Version": "0.3.2", + "splus2R": { + "Package": "splus2R", + "Version": "1.3-5", "Source": "Repository", - "Title": "Sliding Window Functions", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides type-stable rolling window functions over any R data type. Cumulative and expanding windows are also supported. For more advanced usage, an index can be used as a secondary vector that defines how sliding windows are to be created.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/slider, https://slider.r-lib.org", - "BugReports": "https://github.com/r-lib/slider/issues", + "Title": "Supplemental S-PLUS Functionality in R", + "Authors@R": "c(person(\"William\", \"Constantine\", role=c(\"aut\")), person(\"Tim\", \"Hesterberg\", role=c(\"aut\")), person(\"Knut\", \"Wittkowski\", role=c(\"ctb\")), person(\"Tingting\", \"Song\", role=c(\"ctb\")), person(\"Bill\", \"Dunlap\", role=c(\"ctb\")), person(\"Stephen\", \"Kaluzny\", role=c(\"ctb\", \"cre\"), email=\"spkaluzny@gmail.com\") )", "Depends": [ - "R (>= 4.0.0)" + "R (>= 2.7.2)" ], "Imports": [ - "cli (>= 3.6.1)", - "rlang (>= 1.1.1)", - "vctrs (>= 0.6.3)", - "warp" + "methods" ], - "Suggests": [ - "covr", - "dplyr (>= 1.0.0)", - "knitr", - "lubridate", - "rmarkdown", - "testthat (>= 3.0.0)" - ], - "LinkingTo": [ - "vctrs (>= 0.6.3)" - ], - "VignetteBuilder": "knitr", - "Config/build/compilation-database": "true", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2024-10-25", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Collate": "'arithmetic.R' 'block.R' 'conditions.R' 'hop-common.R' 'hop-index-common.R' 'hop-index.R' 'hop-index2.R' 'hop.R' 'hop2.R' 'phop-index.R' 'phop.R' 'slide-index2.R' 'pslide-index.R' 'slide-period2.R' 'pslide-period.R' 'slide2.R' 'pslide.R' 'segment-tree.R' 'slide-common.R' 'slide-index-common.R' 'slide-index.R' 'slide-period-common.R' 'slide-period.R' 'slide.R' 'slider-package.R' 'summary-index.R' 'summary-slide.R' 'utils.R' 'zzz.R'", + "Description": "Currently there are many functions in S-PLUS that are missing in R. To facilitate the conversion of S-PLUS packages to R packages, this package provides some missing S-PLUS functionality in R.", + "URL": "https://github.com/spkaluzny/splus2r", + "BugReports": "https://github.com/spkaluzny/splus2r/issues", + "License": "GPL-2", + "Collate": "Swrappers.R peaks.R bits.per.integer.R doTest.R muS2RC.R showStructure.R sigseriesS3.R sigseriesS4.R splus2R_is.R splus2R_pkg.R", "NeedsCompilation": "yes", - "Author": "Davis Vaughan [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Davis Vaughan ", - "Repository": "RSPM" - }, - "snakecase": { - "Package": "snakecase", - "Version": "0.11.1", - "Source": "Repository", - "Date": "2023-08-27", - "Title": "Convert Strings into any Case", - "Description": "A consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.", - "Authors@R": "c( person(\"Malte\", \"Grosser\", , \"malte.grosser@gmail.com\", role = c(\"aut\", \"cre\")))", - "Maintainer": "Malte Grosser ", - "Depends": [ - "R (>= 3.2)" - ], - "Imports": [ - "stringr", - "stringi" - ], - "Suggests": [ - "testthat", - "covr", - "tibble", - "purrrlyr", - "knitr", - "rmarkdown", - "magrittr" - ], - "URL": "https://github.com/Tazinho/snakecase", - "BugReports": "https://github.com/Tazinho/snakecase/issues", - "Encoding": "UTF-8", - "License": "GPL-3", - "RoxygenNote": "6.1.1", - "VignetteBuilder": "knitr", - "NeedsCompilation": "no", - "Author": "Malte Grosser [aut, cre]", + "Author": "William Constantine [aut], Tim Hesterberg [aut], Knut Wittkowski [ctb], Tingting Song [ctb], Bill Dunlap [ctb], Stephen Kaluzny [ctb, cre]", + "Maintainer": "Stephen Kaluzny ", "Repository": "CRAN" }, - "sourcetools": { - "Package": "sourcetools", - "Version": "0.1.7-1", - "Source": "Repository", - "Type": "Package", - "Title": "Tools for Reading, Tokenizing and Parsing R Code", - "Author": "Kevin Ushey", - "Maintainer": "Kevin Ushey ", - "Description": "Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code.", - "License": "MIT + file LICENSE", - "Depends": [ - "R (>= 3.0.2)" - ], - "Suggests": [ - "testthat" - ], - "RoxygenNote": "5.0.1", - "BugReports": "https://github.com/kevinushey/sourcetools/issues", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Repository": "CRAN" - }, - "sparsevctrs": { - "Package": "sparsevctrs", - "Version": "0.3.4", - "Source": "Repository", - "Title": "Sparse Vectors for Use in Data Frames", - "Authors@R": "c( person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0679-1945\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Provides sparse vectors powered by ALTREP (Alternative Representations for R Objects) that behave like regular vectors, and can thus be used in data frames. Also provides tools to convert between sparse matrices and data frames with sparse columns and functions to interact with sparse vectors.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/sparsevctrs, https://r-lib.github.io/sparsevctrs/", - "BugReports": "https://github.com/r-lib/sparsevctrs/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "cli (>= 3.4.0)", - "rlang (>= 1.1.0)", - "vctrs" - ], - "Suggests": [ - "knitr", - "Matrix", - "methods", - "rmarkdown", - "testthat (>= 3.0.0)", - "tibble", - "withr" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate, rmarkdown, lobstr, ggplot2, bench, tidyr, ggbeeswarm", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Config/usethis/last-upkeep": "2025-05-25", - "NeedsCompilation": "yes", - "Author": "Emil Hvitfeldt [aut, cre] (ORCID: ), Davis Vaughan [ctb], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Emil Hvitfeldt ", - "Repository": "RSPM" - }, "srvyr": { "Package": "srvyr", "Version": "1.3.0", @@ -7349,81 +4967,6 @@ "Maintainer": "Greg Freedman Ellis ", "Repository": "CRAN" }, - "stopwords": { - "Package": "stopwords", - "Version": "2.3", - "Source": "Repository", - "Type": "Package", - "Title": "Multilingual Stopword Lists", - "Authors@R": "c(person(\"Kenneth\", \"Benoit\", email = \"kbenoit@lse.ac.uk\", role = c(\"aut\", \"cre\")), person(\"David\", \"Muhr\", email = \"muhrdavid+github@gmail.com\", role = \"aut\"), person(\"Kohei\", \"Watanabe\", email = \"watanabe.kohei@gmail.com\", role = \"aut\"))", - "Description": "Provides multiple sources of stopwords, for use in text analysis and natural language processing.", - "License": "MIT + file LICENSE", - "Depends": [ - "R (>= 2.10)" - ], - "Imports": [ - "ISOcodes" - ], - "Suggests": [ - "covr", - "quanteda", - "spelling", - "testthat" - ], - "URL": "https://github.com/quanteda/stopwords", - "BugReports": "https://github.com/quanteda/stopwords/issues", - "Encoding": "UTF-8", - "LazyData": "true", - "Language": "en-GB", - "RoxygenNote": "7.1.1", - "NeedsCompilation": "no", - "Author": "Kenneth Benoit [aut, cre], David Muhr [aut], Kohei Watanabe [aut]", - "Maintainer": "Kenneth Benoit ", - "Repository": "RSPM" - }, - "stringfish": { - "Package": "stringfish", - "Version": "0.17.0", - "Source": "Repository", - "Title": "Alt String Implementation", - "Date": "2025-07-12", - "Authors@R": "c( person(\"Travers\", \"Ching\", email = \"traversc@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Phillip\", \"Hazel\", role = c(\"ctb\"), comment = \"Bundled PCRE2 code\"), person(\"Zoltan\", \"Herczeg\", role = c(\"ctb\", \"cph\"), comment = \"Bundled PCRE2 code\"), person(\"University of Cambridge\", role = c(\"cph\"), comment = \"Bundled PCRE2 code\"), person(\"Tilera Corporation\", role = c(\"cph\"), comment = \"Stack-less Just-In-Time compiler bundled with PCRE2\"), person(\"Yann\", \"Collet\", role = c(\"ctb\", \"cph\"), comment = \"Yann Collet is the author of the bundled xxHash code\"))", - "Maintainer": "Travers Ching ", - "Description": "Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.", - "License": "GPL-3", - "Biarch": "true", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 3.6.0)" - ], - "SystemRequirements": "GNU make", - "LinkingTo": [ - "Rcpp (>= 0.12.18.3)", - "RcppParallel (>= 5.1.4)" - ], - "Imports": [ - "Rcpp", - "RcppParallel" - ], - "Suggests": [ - "qs2", - "qs", - "knitr", - "rmarkdown", - "usethis", - "dplyr", - "stringr", - "rlang" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.2", - "Copyright": "Copyright for the bundled 'PCRE2' library is held by University of Cambridge, Zoltan Herczeg and Tilera Coporation (Stack-less Just-In-Time compiler); Copyright for the bundled 'xxHash' code is held by Yann Collet.", - "URL": "https://github.com/traversc/stringfish", - "BugReports": "https://github.com/traversc/stringfish/issues", - "NeedsCompilation": "yes", - "Author": "Travers Ching [aut, cre, cph], Phillip Hazel [ctb] (Bundled PCRE2 code), Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code), University of Cambridge [cph] (Bundled PCRE2 code), Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with PCRE2), Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash code)", - "Repository": "RSPM" - }, "stringi": { "Package": "stringi", "Version": "1.8.7", @@ -7546,8 +5089,7 @@ "URL": "http://r-survey.r-forge.r-project.org/survey/", "NeedsCompilation": "yes", "Author": "Thomas Lumley [aut], Peter Gao [aut], Ben Schneider [aut], \"Thomas Lumley\" [cre]", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "survival": { "Package": "survival", @@ -7696,68 +5238,6 @@ "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, - "textrecipes": { - "Package": "textrecipes", - "Version": "1.1.0", - "Source": "Repository", - "Title": "Extra 'Recipes' for Text Processing", - "Authors@R": "c( person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0679-1945\")), person(given = \"Michael W.\", \"Kearney\", email = \"kearneymw@missouri.edu\", role = \"cph\", comment = \"author of count_functions\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Converting text to numerical features requires specifically created procedures, which are implemented as steps according to the 'recipes' package. These steps allows for tokenization, filtering, counting (tf and tfidf) and feature hashing.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/textrecipes, https://textrecipes.tidymodels.org/", - "BugReports": "https://github.com/tidymodels/textrecipes/issues", - "Depends": [ - "R (>= 3.6)", - "recipes (>= 1.2.0)" - ], - "Imports": [ - "cli", - "lifecycle", - "dplyr", - "generics (>= 0.1.0)", - "magrittr", - "Matrix", - "purrr", - "rlang (>= 1.1.0)", - "SnowballC", - "sparsevctrs (>= 0.3.0)", - "tibble", - "tokenizers", - "vctrs", - "glue" - ], - "Suggests": [ - "covr", - "data.table", - "dials (>= 1.2.0)", - "hardhat", - "janitor", - "knitr", - "modeldata", - "reticulate", - "rmarkdown", - "sentencepiece", - "spacyr", - "stopwords", - "stringi", - "testthat (>= 3.0.0)", - "text2vec", - "tokenizers.bpe", - "udpipe", - "wordpiece" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate, reticulate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "SystemRequirements": "\"GNU make\"", - "NeedsCompilation": "yes", - "Author": "Emil Hvitfeldt [aut, cre] (), Michael W. Kearney [cph] (author of count_functions), Posit Software, PBC [cph, fnd]", - "Maintainer": "Emil Hvitfeldt ", - "Repository": "CRAN" - }, "textshaping": { "Package": "textshaping", "Version": "1.0.1", @@ -7890,60 +5370,6 @@ "NeedsCompilation": "no", "Repository": "RSPM" }, - "tidymodels": { - "Package": "tidymodels", - "Version": "1.3.0", - "Source": "Repository", - "Title": "Easily Install and Load the 'Tidymodels' Packages", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2402-136X\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "The tidy modeling \"verse\" is a collection of packages for modeling and statistical analysis that share the underlying design philosophy, grammar, and data structures of the tidyverse.", - "License": "MIT + file LICENSE", - "URL": "https://tidymodels.tidymodels.org, https://github.com/tidymodels/tidymodels", - "BugReports": "https://github.com/tidymodels/tidymodels/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "broom (>= 1.0.7)", - "cli (>= 3.6.4)", - "conflicted (>= 1.2.0)", - "dials (>= 1.4.0)", - "dplyr (>= 1.1.4)", - "ggplot2 (>= 3.5.1)", - "hardhat (>= 1.4.1)", - "infer (>= 1.0.7)", - "modeldata (>= 1.4.0)", - "parsnip (>= 1.3.0)", - "purrr (>= 1.0.4)", - "recipes (>= 1.1.1)", - "rlang (>= 1.1.5)", - "rsample (>= 1.2.1)", - "rstudioapi (>= 0.17.1)", - "tibble (>= 3.2.1)", - "tidyr (>= 1.3.1)", - "tune (>= 1.3.0)", - "workflows (>= 1.2.0)", - "workflowsets (>= 1.1.0)", - "yardstick (>= 1.3.2)" - ], - "Suggests": [ - "covr", - "glue", - "knitr", - "rmarkdown", - "testthat (>= 3.0.0)", - "xml2" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre] (), Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Max Kuhn ", - "Repository": "RSPM" - }, "tidyr": { "Package": "tidyr", "Version": "1.3.1", @@ -8037,70 +5463,6 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, - "tidytext": { - "Package": "tidytext", - "Version": "0.4.2", - "Source": "Repository", - "Type": "Package", - "Title": "Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools", - "Authors@R": "c( person(\"Gabriela\", \"De Queiroz\", , \"gabidequeiroz@gmail.com\", role = \"ctb\"), person(\"Colin\", \"Fay\", , \"contact@colinfay.me\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7343-1846\")), person(\"Emil\", \"Hvitfeldt\", , \"emilhhvitfeldt@gmail.com\", role = \"ctb\"), person(\"Os\", \"Keyes\", , \"ironholds@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5196-609X\")), person(\"Kanishka\", \"Misra\", , \"kmisra@purdue.edu\", role = \"ctb\"), person(\"Tim\", \"Mastny\", , \"tim.mastny@gmail.com\", role = \"ctb\"), person(\"Jeff\", \"Erickson\", , \"jeff@erick.so\", role = \"ctb\"), person(\"David\", \"Robinson\", , \"admiral.david@gmail.com\", role = \"aut\"), person(\"Julia\", \"Silge\", , \"julia.silge@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3671-836X\")) )", - "Description": "Using tidy data principles can make many text mining tasks easier, more effective, and consistent with tools already in wide use. Much of the infrastructure needed for text mining with tidy data frames already exists in packages like 'dplyr', 'broom', 'tidyr', and 'ggplot2'. In this package, we provide functions and supporting data sets to allow conversion of text to and from tidy formats, and to switch seamlessly between tidy tools and existing text mining packages.", - "License": "MIT + file LICENSE", - "URL": "https://juliasilge.github.io/tidytext/, https://github.com/juliasilge/tidytext", - "BugReports": "https://github.com/juliasilge/tidytext/issues", - "Depends": [ - "R (>= 2.10)" - ], - "Imports": [ - "cli", - "dplyr (>= 1.1.1)", - "generics", - "janeaustenr", - "lifecycle", - "Matrix", - "methods", - "purrr (>= 0.1.1)", - "rlang (>= 0.4.10)", - "stringr", - "tibble", - "tokenizers", - "vctrs" - ], - "Suggests": [ - "broom", - "covr", - "data.table", - "ggplot2", - "hunspell", - "knitr", - "mallet", - "NLP", - "quanteda", - "readr", - "reshape2", - "rmarkdown", - "scales", - "stm", - "stopwords", - "testthat (>= 2.1.0)", - "textdata", - "tidyr", - "tm", - "topicmodels", - "vdiffr", - "wordcloud" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "ropensci/gutenbergr", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "TRUE", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Gabriela De Queiroz [ctb], Colin Fay [ctb] (), Emil Hvitfeldt [ctb], Os Keyes [ctb] (), Kanishka Misra [ctb], Tim Mastny [ctb], Jeff Erickson [ctb], David Robinson [aut], Julia Silge [aut, cre] ()", - "Maintainer": "Julia Silge ", - "Repository": "CRAN" - }, "tidyverse": { "Package": "tidyverse", "Version": "2.0.0", @@ -8165,34 +5527,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "timeDate": { - "Package": "timeDate", - "Version": "4041.110", - "Source": "Repository", - "Title": "Rmetrics - Chronological and Calendar Objects", - "Authors@R": "c(person(\"Diethelm\", \"Wuertz\", role=\"aut\", comment = \"original code\") , person(\"Tobias\", \"Setz\", role = c(\"aut\"), email = \"tobias.setz@live.com\") , person(\"Yohan\", \"Chalabi\", role = \"aut\") , person(\"Martin\",\"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(given = c(\"Joe\", \"W.\"), family = \"Byers\", role = \"ctb\") , person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"cre\", \"aut\"), email = \"georgi.boshnakov@manchester.ac.uk\") )", - "Description": "The 'timeDate' class fulfils the conventions of the ISO 8601 standard as well as of the ANSI C and POSIX standards. Beyond these standards it provides the \"Financial Center\" concept which allows to handle data records collected in different time zones and mix them up to have always the proper time stamps with respect to your personal financial center, or alternatively to the GMT reference time. It can thus also handle time stamps from historical data records from the same time zone, even if the financial centers changed day light saving times at different calendar dates.", - "Depends": [ - "R (>= 3.6.0)", - "methods" - ], - "Imports": [ - "graphics", - "utils", - "stats" - ], - "Suggests": [ - "RUnit" - ], - "License": "GPL (>= 2)", - "Encoding": "UTF-8", - "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://r-forge.r-project.org/scm/viewvc.php/pkg/timeDate/?root=rmetrics (devel), https://www.rmetrics.org", - "BugReports": "https://r-forge.r-project.org/projects/rmetrics", - "NeedsCompilation": "no", - "Author": "Diethelm Wuertz [aut] (original code), Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] (), Joe W. Byers [ctb], Georgi N. Boshnakov [cre, aut]", - "Maintainer": "Georgi N. Boshnakov ", - "Repository": "RSPM" - }, "timechange": { "Package": "timechange", "Version": "0.3.0", @@ -8223,7 +5557,7 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.57", + "Version": "0.58", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -8240,145 +5574,12 @@ "URL": "https://github.com/rstudio/tinytex", "BugReports": "https://github.com/rstudio/tinytex/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre, cph] (), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (), Devon Ryan [ctb] (), Ethan Heinzen [ctb], Fernando Cagua [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: ), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Ethan Heinzen [ctb], Fernando Cagua [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "tokenizers": { - "Package": "tokenizers", - "Version": "0.3.0", - "Source": "Repository", - "Type": "Package", - "Title": "Fast, Consistent Tokenization of Natural Language Text", - "Date": "2022-12-19", - "Description": "Convert natural language text into tokens. Includes tokenizers for shingled n-grams, skip n-grams, words, word stems, sentences, paragraphs, characters, shingled characters, lines, Penn Treebank, regular expressions, as well as functions for counting characters, words, and sentences, and a function for splitting longer texts into separate documents, each with the same number of words. The tokenizers have a consistent interface, and the package is built on the 'stringi' and 'Rcpp' packages for fast yet correct tokenization in 'UTF-8'.", - "License": "MIT + file LICENSE", - "LazyData": "yes", - "Authors@R": "c(person(\"Lincoln\", \"Mullen\", role = c(\"aut\", \"cre\"), email = \"lincoln@lincolnmullen.com\", comment = c(ORCID = \"0000-0001-5103-6917\")), person(\"Os\", \"Keyes\", role = c(\"ctb\"), email = \"ironholds@gmail.com\", comment = c(ORCID = \"0000-0001-5196-609X\")), person(\"Dmitriy\", \"Selivanov\", role = c(\"ctb\"), email = \"selivanov.dmitriy@gmail.com\"), person(\"Jeffrey\", \"Arnold\", role = c(\"ctb\"), email = \"jeffrey.arnold@gmail.com\", comment = c(ORCID = \"0000-0001-9953-3904\")), person(\"Kenneth\", \"Benoit\", role = c(\"ctb\"), email = \"kbenoit@lse.ac.uk\", comment = c(ORCID = \"0000-0002-0797-564X\")))", - "URL": "https://docs.ropensci.org/tokenizers/, https://github.com/ropensci/tokenizers", - "BugReports": "https://github.com/ropensci/tokenizers/issues", - "RoxygenNote": "7.2.1", - "Depends": [ - "R (>= 3.1.3)" - ], - "Imports": [ - "stringi (>= 1.0.1)", - "Rcpp (>= 0.12.3)", - "SnowballC (>= 0.5.1)" - ], - "LinkingTo": [ - "Rcpp" - ], - "Encoding": "UTF-8", - "Suggests": [ - "covr", - "knitr", - "rmarkdown", - "stopwords (>= 0.9.0)", - "testthat" - ], - "VignetteBuilder": "knitr", - "NeedsCompilation": "yes", - "Author": "Lincoln Mullen [aut, cre] (), Os Keyes [ctb] (), Dmitriy Selivanov [ctb], Jeffrey Arnold [ctb] (), Kenneth Benoit [ctb] ()", - "Maintainer": "Lincoln Mullen ", - "Repository": "CRAN" - }, - "triebeard": { - "Package": "triebeard", - "Version": "0.4.1", - "Source": "Repository", - "Type": "Package", - "Title": "'Radix' Trees in 'Rcpp'", - "Author": "Os Keyes [aut, cre], Drew Schmidt [aut], Yuuki Takano [cph]", - "Maintainer": "Os Keyes ", - "Description": "'Radix trees', or 'tries', are key-value data structures optimised for efficient lookups, similar in purpose to hash tables. 'triebeard' provides an implementation of 'radix trees' for use in R programming and in developing packages with 'Rcpp'.", - "License": "MIT + file LICENSE", - "LinkingTo": [ - "Rcpp" - ], - "Encoding": "UTF-8", - "Imports": [ - "Rcpp" - ], - "RoxygenNote": "7.1.2", - "Suggests": [ - "knitr", - "rmarkdown", - "testthat" - ], - "VignetteBuilder": "knitr", - "URL": "https://github.com/Ironholds/triebeard/", - "BugReports": "https://github.com/Ironholds/triebeard/issues", - "Date": "2023-03-04", - "NeedsCompilation": "yes", - "Repository": "CRAN" - }, - "tune": { - "Package": "tune", - "Version": "1.3.0", - "Source": "Repository", - "Title": "Tidy Tuning Tools", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2402-136X\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "The ability to tune models is important. 'tune' contains functions and classes to be used in conjunction with other 'tidymodels' packages for finding reasonable values of hyper-parameters in models, pre-processing methods, and post-processing steps.", - "License": "MIT + file LICENSE", - "URL": "https://tune.tidymodels.org/, https://github.com/tidymodels/tune", - "BugReports": "https://github.com/tidymodels/tune/issues", - "Depends": [ - "R (>= 4.0)" - ], - "Imports": [ - "cli (>= 3.3.0)", - "dials (>= 1.4.0)", - "doFuture (>= 1.0.0)", - "dplyr (>= 1.1.0)", - "foreach", - "future (>= 1.33.0)", - "generics (>= 0.1.2)", - "ggplot2", - "glue (>= 1.6.2)", - "GPfit", - "hardhat (>= 1.4.1)", - "lifecycle (>= 1.0.0)", - "parsnip (>= 1.2.0)", - "purrr (>= 1.0.0)", - "recipes (>= 1.0.4)", - "rlang (>= 1.1.0)", - "rsample (>= 1.2.1)", - "tibble (>= 3.1.0)", - "tidyr (>= 1.2.0)", - "tidyselect (>= 1.1.2)", - "vctrs (>= 0.6.1)", - "withr", - "workflows (>= 1.2.0)", - "yardstick (>= 1.3.0)" - ], - "Suggests": [ - "C50", - "censored (>= 0.3.0)", - "covr", - "kernlab", - "kknn", - "knitr", - "modeldata", - "scales", - "spelling", - "testthat (>= 3.0.0)", - "xgboost", - "xml2" - ], - "Config/Needs/website": "pkgdown, tidymodels, kknn, doParallel, doFuture, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "Language": "en-US", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Max Kuhn [aut, cre] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Max Kuhn ", - "Repository": "RSPM" - }, "tzdb": { "Package": "tzdb", "Version": "0.5.0", @@ -8409,42 +5610,6 @@ "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, - "urltools": { - "Package": "urltools", - "Version": "1.7.3.1", - "Source": "Repository", - "Type": "Package", - "Title": "Vectorised Tools for URL Handling and Parsing", - "Date": "2019-04-14", - "Authors@R": "c(person(given = \"Os\", family = \"Keyes\", role = c(\"aut\", \"cre\"), email = \"ironholds@gmail.com\"), person(given = \"Jay\", family = \"Jacobs\", role = \"aut\"), person(given = \"Drew\", family = \"Schmidt\", role = \"aut\"), person(given = \"Mark\", family = \"Greenaway\", role = \"ctb\"), person(given = \"Bob\", family = \"Rudis\", role = \"ctb\"), person(given = \"Alex\", family = \"Pinto\", role = \"ctb\"), person(given = \"Maryam\", family = \"Khezrzadeh\", role = \"ctb\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = c(\"Adam\", \"M.\"), family = \"Costello\", role = \"cph\"), person(given = \"Jeff\", family = \"Bezanson\", role = \"cph\"), person(given = \"Peter\", family = \"Meilstrup\", role = \"ctb\"), person(given = \"Xueyuan\", family = \"Jiang\", role = \"ctb\"))", - "Description": "A toolkit for all URL-handling needs, including encoding and decoding, parsing, parameter extraction and modification. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.", - "License": "MIT + file LICENSE", - "LazyData": "TRUE", - "LinkingTo": [ - "Rcpp" - ], - "Imports": [ - "Rcpp", - "methods", - "triebeard" - ], - "Suggests": [ - "testthat", - "knitr" - ], - "URL": "https://github.com/Ironholds/urltools/", - "BugReports": "https://github.com/Ironholds/urltools/issues", - "VignetteBuilder": "knitr", - "RoxygenNote": "6.1.1", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 2.10)" - ], - "NeedsCompilation": "yes", - "Repository": "CRAN", - "Author": "Os Keyes [aut, cre], Jay Jacobs [aut], Drew Schmidt [aut], Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb], Adam M. Costello [cph], Jeff Bezanson [cph], Peter Meilstrup [ctb], Xueyuan Jiang [ctb]", - "Maintainer": "Os Keyes " - }, "utf8": { "Package": "utf8", "Version": "1.2.6", @@ -8542,127 +5707,6 @@ "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, - "vip": { - "Package": "vip", - "Version": "0.4.1", - "Source": "Repository", - "Type": "Package", - "Title": "Variable Importance Plots", - "Authors@R": "c( person(c(\"Brandon\", \"M.\"), family = \"Greenwell\", email = \"greenwell.brandon@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8120-0084\")), person(\"Brad\", \"Boehmke\", email = \"bradleyboehmke@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-3611-8516\")) )", - "Description": "A general framework for constructing variable importance plots from various types of machine learning models in R. Aside from some standard model- specific variable importance measures, this package also provides model- agnostic approaches that can be applied to any supervised learning algorithm. These include 1) an efficient permutation-based variable importance measure, 2) variable importance based on Shapley values (Strumbelj and Kononenko, 2014) , and 3) the variance-based approach described in Greenwell et al. (2018) . A variance-based method for quantifying the relative strength of interaction effects is also included (see the previous reference for details).", - "License": "GPL (>= 2)", - "URL": "https://github.com/koalaverse/vip/, https://koalaverse.github.io/vip/", - "BugReports": "https://github.com/koalaverse/vip/issues", - "Encoding": "UTF-8", - "VignetteBuilder": "knitr", - "Depends": [ - "R (>= 4.1.0)" - ], - "Imports": [ - "foreach", - "ggplot2 (>= 0.9.0)", - "stats", - "tibble", - "utils", - "yardstick" - ], - "Suggests": [ - "bookdown", - "DT", - "covr", - "doParallel", - "dplyr", - "fastshap (>= 0.1.0)", - "knitr", - "lattice", - "mlbench", - "modeldata", - "NeuralNetTools", - "pdp", - "rmarkdown", - "tinytest (>= 1.4.1)", - "varImp" - ], - "Enhances": [ - "C50", - "caret", - "Cubist", - "earth", - "gbm", - "glmnet", - "h2o", - "lightgbm", - "mixOmics", - "mlr", - "mlr3", - "neuralnet", - "nnet", - "parsnip (>= 0.1.7)", - "party", - "partykit", - "pls", - "randomForest", - "ranger", - "rpart", - "RSNNS", - "sparklyr (>= 0.8.0)", - "tidymodels", - "workflows (>= 0.2.3)", - "xgboost" - ], - "LazyData": "true", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "no", - "Author": "Brandon M. Greenwell [aut, cre] (), Brad Boehmke [aut] ()", - "Maintainer": "Brandon M. Greenwell ", - "Repository": "CRAN" - }, - "viridis": { - "Package": "viridis", - "Version": "0.6.5", - "Source": "Repository", - "Type": "Package", - "Title": "Colorblind-Friendly Color Maps for R", - "Date": "2024-01-28", - "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", - "Maintainer": "Simon Garnier ", - "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This package also contains 'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the 'ggplot2' bindings can be found at .", - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 2.10)", - "viridisLite (>= 0.4.0)" - ], - "Imports": [ - "ggplot2 (>= 1.0.1)", - "gridExtra" - ], - "Suggests": [ - "hexbin (>= 1.27.0)", - "scales", - "MASS", - "knitr", - "dichromat", - "colorspace", - "httr", - "mapproj", - "vdiffr", - "svglite (>= 1.2.0)", - "testthat", - "covr", - "rmarkdown", - "maps", - "terra" - ], - "LazyData": "true", - "VignetteBuilder": "knitr", - "URL": "https://sjmgarnier.github.io/viridis/, https://github.com/sjmgarnier/viridis/", - "BugReports": "https://github.com/sjmgarnier/viridis/issues", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", - "Repository": "CRAN" - }, "viridisLite": { "Package": "viridisLite", "Version": "0.4.2", @@ -8761,34 +5805,6 @@ "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, - "warp": { - "Package": "warp", - "Version": "0.2.1", - "Source": "Repository", - "Title": "Group Dates", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Tooling to group dates by a variety of periods including: yearly, monthly, by second, by week of the month, and more. The groups are defined in such a way that they also represent the distance between dates in terms of the period. This extracts valuable information that can be used in further calculations that rely on a specific temporal spacing between observations.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/DavisVaughan/warp, https://davisvaughan.github.io/warp/", - "BugReports": "https://github.com/DavisVaughan/warp/issues", - "Depends": [ - "R (>= 3.2)" - ], - "Suggests": [ - "covr", - "knitr", - "rmarkdown", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Davis Vaughan [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Davis Vaughan ", - "Repository": "RSPM" - }, "withr": { "Package": "withr", "Version": "3.0.2", @@ -8827,123 +5843,9 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, - "workflows": { - "Package": "workflows", - "Version": "1.2.0", - "Source": "Repository", - "Title": "Modeling Workflows", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5676-5107\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Managing both a 'parsnip' model and its data preparation steps, such as a model formula or recipe from 'recipes', can often be challenging. The goal of 'workflows' is to streamline this process by bundling the model with its data preparation, all within the same object.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/workflows, https://workflows.tidymodels.org", - "BugReports": "https://github.com/tidymodels/workflows/issues", - "Depends": [ - "R (>= 4.0)" - ], - "Imports": [ - "cli (>= 3.3.0)", - "generics (>= 0.1.2)", - "glue (>= 1.6.2)", - "hardhat (>= 1.4.1)", - "lifecycle (>= 1.0.3)", - "modelenv (>= 0.1.0)", - "parsnip (>= 1.3.0)", - "recipes (>= 1.1.1)", - "rlang (>= 1.1.0)", - "tidyselect (>= 1.2.0)", - "sparsevctrs (>= 0.2.0)", - "vctrs (>= 0.4.1)", - "withr" - ], - "Suggests": [ - "butcher (>= 0.2.0)", - "covr", - "dials (>= 1.0.0)", - "glmnet", - "knitr", - "magrittr", - "Matrix", - "methods", - "modeldata (>= 1.0.0)", - "probably", - "rsample", - "rmarkdown", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "dplyr, ggplot2, tidyr, tidyverse/tidytemplate, yardstick", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Davis Vaughan [aut], Simon Couch [aut, cre] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Simon Couch ", - "Repository": "RSPM" - }, - "workflowsets": { - "Package": "workflowsets", - "Version": "1.1.1", - "Source": "Repository", - "Title": "Create a Collection of 'tidymodels' Workflows", - "Authors@R": "c( person(\"Hannah\", \"Frick\", , \"hannah@posit.co\", role =c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6049-5258\")), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-2402-136X\")), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-5676-5107\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "A workflow is a combination of a model and preprocessors (e.g, a formula, recipe, etc.) (Kuhn and Silge (2021) ). In order to try different combinations of these, an object can be created that contains many workflows. There are functions to create workflows en masse as well as training them and visualizing the results.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/workflowsets, https://workflowsets.tidymodels.org", - "BugReports": "https://github.com/tidymodels/workflowsets/issues", - "Depends": [ - "R (>= 4.1)" - ], - "Imports": [ - "cli", - "dplyr (>= 1.0.0)", - "generics (>= 0.1.2)", - "ggplot2", - "hardhat (>= 1.2.0)", - "lifecycle (>= 1.0.0)", - "parsnip (>= 1.2.1)", - "pillar (>= 1.7.0)", - "prettyunits", - "purrr", - "rlang (>= 1.1.0)", - "rsample (>= 0.0.9)", - "stats", - "tibble (>= 3.1.0)", - "tidyr", - "tune (>= 1.2.0)", - "vctrs", - "withr", - "workflows (>= 1.1.4)" - ], - "Suggests": [ - "covr", - "dials (>= 0.1.0)", - "finetune", - "kknn", - "knitr", - "modeldata", - "recipes (>= 1.1.0)", - "rmarkdown", - "spelling", - "testthat (>= 3.0.0)", - "tidyclust", - "yardstick (>= 1.3.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "discrim, rpart, mda, klaR, earth, tidymodels, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2025-04-25", - "Encoding": "UTF-8", - "Language": "en-US", - "LazyData": "true", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hannah Frick [aut, cre] (ORCID: ), Max Kuhn [aut] (ORCID: ), Simon Couch [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Hannah Frick ", - "Repository": "RSPM" - }, "xfun": { "Package": "xfun", - "Version": "0.52", + "Version": "0.54", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -8965,7 +5867,7 @@ "rstudioapi", "tinytex (>= 0.30)", "mime", - "litedown (>= 0.4)", + "litedown (>= 0.6)", "commonmark", "knitr (>= 1.50)", "remotes", @@ -8975,69 +5877,23 @@ "jsonlite", "magick", "yaml", + "data.table", "qs" ], "License": "MIT + file LICENSE", "URL": "https://github.com/yihui/xfun", "BugReports": "https://github.com/yihui/xfun/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "litedown", "NeedsCompilation": "yes", - "Author": "Yihui Xie [aut, cre, cph] (, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (), Christophe Dervieux [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "xgboost": { - "Package": "xgboost", - "Version": "1.7.11.1", - "Source": "Repository", - "Type": "Package", - "Title": "Extreme Gradient Boosting", - "Date": "2025-05-01", - "Authors@R": "c( person(\"Tianqi\", \"Chen\", role = c(\"aut\"), email = \"tianqi.tchen@gmail.com\"), person(\"Tong\", \"He\", role = c(\"aut\"), email = \"hetong007@gmail.com\"), person(\"Michael\", \"Benesty\", role = c(\"aut\"), email = \"michael@benesty.fr\"), person(\"Vadim\", \"Khotilovich\", role = c(\"aut\"), email = \"khotilovich@gmail.com\"), person(\"Yuan\", \"Tang\", role = c(\"aut\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Hyunsu\", \"Cho\", role = c(\"aut\"), email = \"chohyu01@cs.washington.edu\"), person(\"Kailong\", \"Chen\", role = c(\"aut\")), person(\"Rory\", \"Mitchell\", role = c(\"aut\")), person(\"Ignacio\", \"Cano\", role = c(\"aut\")), person(\"Tianyi\", \"Zhou\", role = c(\"aut\")), person(\"Mu\", \"Li\", role = c(\"aut\")), person(\"Junyuan\", \"Xie\", role = c(\"aut\")), person(\"Min\", \"Lin\", role = c(\"aut\")), person(\"Yifeng\", \"Geng\", role = c(\"aut\")), person(\"Yutian\", \"Li\", role = c(\"aut\")), person(\"Jiaming\", \"Yuan\", role = c(\"aut\", \"cre\"), email = \"jm.yuan@outlook.com\"), person(\"XGBoost contributors\", role = c(\"cph\"), comment = \"base XGBoost implementation\") )", - "Maintainer": "Jiaming Yuan ", - "Description": "Extreme Gradient Boosting, which is an efficient implementation of the gradient boosting framework from Chen & Guestrin (2016) . This package is its R interface. The package includes efficient linear model solver and tree learning algorithms. The package can automatically do parallel computation on a single machine which could be more than 10 times faster than existing gradient boosting packages. It supports various objective functions, including regression, classification and ranking. The package is made to be extensible, so that users are also allowed to define their own objectives easily.", - "License": "Apache License (== 2.0) | file LICENSE", - "URL": "https://github.com/dmlc/xgboost", - "BugReports": "https://github.com/dmlc/xgboost/issues", - "NeedsCompilation": "yes", - "VignetteBuilder": "knitr", - "Suggests": [ - "knitr", - "rmarkdown", - "ggplot2 (>= 1.0.1)", - "DiagrammeR (>= 0.9.0)", - "Ckmeans.1d.dp (>= 3.3.1)", - "vcd (>= 1.3)", - "cplm", - "e1071", - "caret", - "testthat", - "lintr", - "igraph (>= 1.0.1)", - "float", - "crayon", - "titanic" - ], - "Depends": [ - "R (>= 3.3.0)" - ], - "Imports": [ - "Matrix (>= 1.1-0)", - "methods", - "data.table (>= 1.9.6)", - "jsonlite (>= 1.0)" - ], - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "SystemRequirements": "GNU make, C++17", - "Author": "Tianqi Chen [aut], Tong He [aut], Michael Benesty [aut], Vadim Khotilovich [aut], Yuan Tang [aut] (ORCID: ), Hyunsu Cho [aut], Kailong Chen [aut], Rory Mitchell [aut], Ignacio Cano [aut], Tianyi Zhou [aut], Mu Li [aut], Junyuan Xie [aut], Min Lin [aut], Yifeng Geng [aut], Yutian Li [aut], Jiaming Yuan [aut, cre], XGBoost contributors [cph] (base XGBoost implementation)", - "Repository": "CRAN" - }, "xml2": { "Package": "xml2", - "Version": "1.3.8", + "Version": "1.4.0", "Source": "Repository", "Title": "Parse XML", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", @@ -9067,7 +5923,7 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", "Config/testthat/edition": "3", @@ -9076,106 +5932,101 @@ "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, - 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"Maintainer": "David Scott ", + "Type": "Package", + "Title": "eXtensible Time Series", + "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=\"Ross\", family=\"Bennett\", role=\"ctb\"), person(given=\"Corwin\", family=\"Joy\", role=\"ctb\") )", + "Depends": [ + "R (>= 3.6.0)", + "zoo (>= 1.7-12)" + ], "Imports": [ - "stats", - "utils" + "methods" + ], + "LinkingTo": [ + "zoo" ], "Suggests": [ - "knitr", - "plm", - "zoo", - "survival" - ], - "VignetteBuilder": "knitr", - "Description": "Coerce data to LaTeX and HTML tables.", - "URL": "http://xtable.r-forge.r-project.org/", - "Depends": [ - "R (>= 2.10.0)" + "timeSeries", + "timeDate", + "tseries", + "chron", + "tinytest" ], + "LazyLoad": "yes", + "Description": "Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.", "License": "GPL (>= 2)", - 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Ulrich ", + "Repository": "CRAN" }, "yaml": { "Package": "yaml", - "Version": "2.3.10", + "Version": "2.3.11", "Source": "Repository", "Type": "Package", "Title": "Methods to Convert R Data to YAML and Back", - "Date": "2024-07-22", + "Date": "2025-11-06", "Suggests": [ "RUnit" ], - "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]", + "Authors@R": "c( person(\"Shawn\", \"Garbett\", role = c(\"cre\",\"ctb\"), email = \"shawn.garbett@vumc.org\", comment = c(ORCID=\"0000-0003-4079-5621\") ), person(\"Jeremy\", \"Stephens\", role = c(\"aut\", \"ctb\")), person(\"Kirill\", \"Simonov\", role = \"aut\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = c(ORCID=\"0000-0003-0645-5666\")), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\", comment = c(ORCID=\"0000-0003-4757-117X\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"reikoch\", role = \"ctb\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = c(ORCID=\"0000-0002-5613-5006\")), person(\"Brendan\", \"O'Connor\", role = \"ctb\"), person(\"Michael\", \"Quinn\", role = \"ctb\"), person(\"Charlie\", \"Gao\", role = \"ctb\"), person(c(\"Gregory\", \"R.\"), \"Warnes\", role = \"ctb\"), person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = \"ctb\") )", "Maintainer": "Shawn Garbett ", "License": "BSD_3_clause + file LICENSE", "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", "URL": "https://github.com/vubiostat/r-yaml/", "BugReports": "https://github.com/vubiostat/r-yaml/issues", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Author": "Shawn Garbett [cre, ctb] (ORCID: ), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: ), Zhuoer Dong [ctb], Hadley Wickham [ctb] (ORCID: ), Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: ), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]", + "Repository": "CRAN" }, - "yardstick": { - "Package": "yardstick", - "Version": "1.3.2", + "zoo": { + "Package": "zoo", + "Version": "1.8-14", "Source": "Repository", - "Type": "Package", - "Title": "Tidy Characterizations of Model Performance", - "Authors@R": "c( person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Emil\", \"Hvitfeldt\", , \"emil.hvitfeldt@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0679-1945\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Tidy tools for quantifying how well model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).", - "License": "MIT + file LICENSE", - "URL": "https://github.com/tidymodels/yardstick, https://yardstick.tidymodels.org", - "BugReports": "https://github.com/tidymodels/yardstick/issues", + "Date": "2025-04-09", + "Title": "S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Gabor\", family = \"Grothendieck\", role = \"aut\", email = \"ggrothendieck@gmail.com\"), person(given = c(\"Jeffrey\", \"A.\"), family = \"Ryan\", role = \"aut\", email = \"jeff.a.ryan@gmail.com\"), person(given = c(\"Joshua\", \"M.\"), family = \"Ulrich\", role = \"ctb\", email = \"josh.m.ulrich@gmail.com\"), person(given = \"Felix\", family = \"Andrews\", role = \"ctb\", email = \"felix@nfrac.org\"))", + "Description": "An S3 class with methods for totally ordered indexed observations. 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Ryan [aut], Joshua M. Ulrich [ctb], Felix Andrews [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" } } }