initial commit

2026-06-19 17:31:51 +02:00
commit ef4936b10c
49 changed files with 4554 additions and 0 deletions
@@ -0,0 +1,2 @@
+/.quarto/
+**/*.quarto_ipynb
@@ -0,0 +1,62 @@
+# Supplements/Taskfile.yml
+version: "3"
+
+vars:
+  PROJECT_NAME: Supplements
+  PYTHON: '{{if eq OS "windows"}}python{{else}}python3{{end}}'
+  UTILS: "../resources/scripts/task_utils.py"
+
+tasks:
+  default:
+    desc: "List available tasks"
+    cmd: task --list
+
+  render:
+    desc: "Render with the default (non-anonymized) profile, all formats"
+    cmd: quarto render --profile=default --output-dir _output/default
+
+  render:anonymized:
+    desc: "Render with the anonymized profile, all formats"
+    cmd: quarto render --profile=anonymized --output-dir _output/anonymized
+
+  render:html:
+    desc: "Render to HTML only (default profile)"
+    cmd: quarto render --profile=default --to html --output-dir _output/default
+
+  render:docx:
+    desc: "Render to docx only (default profile)"
+    cmd: quarto render --profile=default --to docx --output-dir _output/default
+
+  render:pdf:
+    desc: "Render to PDF only (default profile) - requires pdf format configured in _quarto.yml"
+    cmd: quarto render --profile=default --to pdf --output-dir _output/default
+
+  package:
+    desc: "Zip the default-profile rendered output into Supplements-default.zip"
+    deps: [render]
+    cmd: "{{.PYTHON}} {{.UTILS}} zip _output/default {{.PROJECT_NAME}}-default.zip"
+    sources:
+      - _output/default/**/*
+    generates:
+      - "{{.PROJECT_NAME}}-default.zip"
+
+  package:anonymized:
+    desc: "Zip the anonymized-profile rendered output into Supplements-anonymized.zip"
+    deps: [render:anonymized]
+    cmd: "{{.PYTHON}} {{.UTILS}} zip _output/anonymized {{.PROJECT_NAME}}-anonymized.zip"
+    sources:
+      - _output/anonymized/**/*
+    generates:
+      - "{{.PROJECT_NAME}}-anonymized.zip"
+
+  package:data:
+    desc: "Zip the data/ folder into data.zip (skips with a warning if data/ doesn't exist)"
+    cmd: "{{.PYTHON}} {{.UTILS}} zip-if-exists data data.zip"
+    sources:
+      - data/**/*
+    generates:
+      - data.zip
+
+  clean:
+    desc: "Remove _output, .quarto, and stray *_files/*_cache folders"
+    cmd: "{{.PYTHON}} {{.UTILS}} clean-project ."
@@ -0,0 +1,5 @@
+project:
+  output-dir: _output/anonymized
+
+metadata-files:
+  - ../resources/author_profiles/_quarto-anonymized.yml
@@ -0,0 +1,5 @@
+project:
+  output-dir: _output/default
+
+metadata-files:
+  - ../resources/author_profiles/_quarto-default.yml
@@ -0,0 +1,22 @@
+project:
+  type: manuscript
+  output-dir: _output
+
+manuscript:
+  article: index.qmd
+
+format:
+  html:
+    comments:
+      hypothesis: true
+  docx: default
+  jats: default
+
+  # (other formats)
+  # pdf: default
+
+execute:
+  freeze: true
+
+
+
@@ -0,0 +1 @@
+Put your figures in this folder.
@@ -0,0 +1 @@
+Put your figures in this folder.
@@ -0,0 +1,12 @@
+---
+title: Supplementary Materials
+authors:
+  - name: Norah Jones
+    affiliation: The University
+    roles: writing
+    corresponding: true
+bibliography: references.bib
+---
+
+## Section
+This is a simple placeholder for the manuscript's main document [@knuth84].
@@ -0,0 +1,19 @@
+@article{knuth84,
+  author = {Knuth, Donald E.},
+  title = {Literate Programming},
+  year = {1984},
+  issue_date = {May 1984},
+  publisher = {Oxford University Press, Inc.},
+  address = {USA},
+  volume = {27},
+  number = {2},
+  issn = {0010-4620},
+  url = {https://doi.org/10.1093/comjnl/27.2.97},
+  doi = {10.1093/comjnl/27.2.97},
+  journal = {Comput. J.},
+  month = may,
+  pages = {97–111},
+  numpages = {15}
+}
+
+